Wall clock time and date at job start Mon Mar 30 2020 07:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47445 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46873 * 119.99886 * 3 2 1 7 7 C 1.37881 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47563 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47129 * 180.02562 * 12 11 10 14 14 N 1.46490 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.39972 * 120.00016 * 180.02562 * 14 13 12 16 16 C 1.38719 * 120.08833 * 0.29319 * 15 14 13 17 17 C 1.38221 * 119.97857 * 180.30054 * 16 15 14 18 18 C 1.38253 * 120.16417 * 359.67634 * 17 16 15 19 19 C 1.38290 * 120.17578 * 0.02796 * 18 17 16 20 20 C 1.38504 * 120.01822 * 359.97438 * 19 18 17 21 21 O 1.36008 * 120.07819 * 180.02562 * 20 19 18 22 22 H 0.96996 * 120.00099 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47031 * 60.00330 * 9 7 2 24 24 H 1.09001 * 109.47435 * 300.00493 * 9 7 2 25 25 H 1.09008 * 109.46850 * 59.99879 * 10 9 7 26 26 H 1.09001 * 109.47190 * 300.00623 * 10 9 7 27 27 H 1.09000 * 109.46871 * 60.00336 * 11 10 9 28 28 H 1.09001 * 109.47477 * 300.00571 * 11 10 9 29 29 H 1.08995 * 109.47245 * 59.99841 * 12 11 10 30 30 H 1.09000 * 109.46976 * 300.00079 * 12 11 10 31 31 H 1.09000 * 109.46937 * 59.99638 * 13 12 11 32 32 H 1.09000 * 109.46390 * 299.99953 * 13 12 11 33 33 H 0.96998 * 120.00631 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.01448 * 0.02562 * 16 15 14 35 35 H 1.08011 * 119.92109 * 179.70022 * 17 16 15 36 36 H 1.08000 * 119.91566 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.98832 * 180.02562 * 19 18 17 38 38 H 0.96700 * 114.00317 * 90.00100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1501 0.0008 13 6 1.7096 -7.4751 0.0008 14 7 2.6616 -8.5885 0.0020 15 6 2.1950 -9.9082 0.0017 16 6 0.8316 -10.1638 -0.0059 17 6 0.3734 -11.4679 0.0000 18 6 1.2708 -12.5195 0.0069 19 6 2.6314 -12.2723 0.0083 20 6 3.0987 -10.9685 0.0024 21 8 4.4366 -10.7240 0.0033 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8897 28 1 0.8539 -5.0447 0.8903 29 1 3.1012 -6.0919 0.8907 30 1 3.1013 -6.0927 -0.8892 31 1 1.0833 -7.5330 -0.8894 32 1 1.0827 -7.5325 0.8906 33 1 3.6152 -8.4114 0.0023 34 1 0.1283 -9.3442 -0.0121 35 1 -0.6884 -11.6658 -0.0010 36 1 0.9083 -13.5369 0.0111 37 1 3.3297 -13.0961 0.0132 38 1 4.8250 -10.6577 -0.8798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034306325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:12 Heat of formation + Delta-G solvation = -47.830779 kcal Electronic energy + Delta-G solvation = -16836.868310 eV Core-core repulsion = 14064.084202 eV Total energy + Delta-G solvation = -2772.784107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04621 -36.99238 -36.48157 -34.72366 -32.76986 -30.70914 -30.10368 -28.43049 -26.11448 -23.84942 -22.60939 -21.68757 -21.01572 -20.02924 -18.55734 -17.11073 -16.37799 -16.17718 -15.72118 -15.46297 -14.53811 -14.44715 -14.31308 -14.01003 -13.83012 -12.71105 -12.60333 -12.49571 -12.29660 -11.87065 -11.69737 -11.58482 -11.27417 -10.96677 -10.66965 -10.56346 -10.48307 -10.44312 -10.12782 -9.66294 -9.27306 -9.02882 -8.91672 -8.33817 -7.49105 -5.99126 -4.01494 1.14290 1.41678 3.29170 3.33299 3.37594 3.40168 3.58922 4.09754 4.46241 4.73646 4.88511 4.95209 5.08319 5.21312 5.33967 5.36359 5.37996 5.50907 5.70399 5.74200 5.78222 5.95436 6.07153 6.19301 6.20506 6.31400 6.42552 6.46582 6.63241 6.77581 6.91636 7.07568 7.15586 7.48225 7.66360 7.68724 7.84302 8.01489 8.44452 9.05774 9.62421 11.12234 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057044 B = 0.002772 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.734271 B =10099.204171 C =10551.049174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.122 3.878 14 N -0.740 5.740 15 C 0.200 3.800 16 C -0.189 4.189 17 C -0.077 4.077 18 C -0.172 4.172 19 C -0.098 4.098 20 C 0.018 3.982 21 O -0.494 6.494 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.402 0.598 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -23.785 -1.609 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.167 4.167 13 C -0.002 4.002 14 N -0.369 5.369 15 C 0.095 3.905 16 C -0.212 4.212 17 C -0.096 4.096 18 C -0.192 4.192 19 C -0.117 4.117 20 C -0.031 4.031 21 O -0.303 6.303 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.228 -23.497 -0.989 23.739 hybrid contribution 0.864 1.067 -0.508 1.464 sum 4.092 -22.430 -1.497 22.849 Atomic orbital electron populations 1.69956 1.06055 1.26677 1.50917 1.25038 0.94858 0.99254 0.95383 0.86661 0.79587 0.83164 0.78605 1.20257 1.21281 1.20256 1.21252 0.92985 0.91229 1.50508 0.92825 1.19099 0.94052 0.91420 0.97127 1.21621 0.99062 0.93901 1.00174 1.21577 0.97657 0.94272 1.01799 1.21821 0.99217 0.93207 1.02422 1.21497 0.92181 0.85417 1.01121 1.44807 1.09117 1.01819 1.81202 1.18257 0.92888 0.84845 0.94555 1.20646 0.93058 0.97678 1.09789 1.20944 0.99563 0.91986 0.97117 1.20768 0.92518 0.98999 1.06951 1.21159 0.96090 0.95329 0.99119 1.17928 0.82551 0.91144 1.11457 1.84921 1.18543 1.93813 1.32976 0.92966 0.96686 0.96685 0.93492 0.93508 0.92263 0.92242 0.91596 0.91681 0.92205 0.92190 0.76240 0.85577 0.85979 0.86190 0.85791 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.11 -1.85 5.21 -26.73 -0.14 -1.99 16 12 C -0.13 -1.65 5.33 -26.73 -0.14 -1.79 16 13 C 0.12 1.40 4.92 -4.05 -0.02 1.38 16 14 N -0.74 -8.30 5.73 -58.50 -0.34 -8.63 16 15 C 0.20 2.32 6.67 -83.56 -0.56 1.76 16 16 C -0.19 -2.05 9.31 -39.41 -0.37 -2.42 16 17 C -0.08 -0.73 10.04 -39.58 -0.40 -1.13 16 18 C -0.17 -1.57 10.04 -39.56 -0.40 -1.97 16 19 C -0.10 -0.96 9.98 -39.46 -0.39 -1.35 16 20 C 0.02 0.20 6.72 -39.08 -0.26 -0.07 16 21 O -0.49 -4.89 12.75 -19.77 -0.25 -5.14 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 32 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 33 H 0.40 4.23 7.84 -40.82 -0.32 3.91 16 34 H 0.13 1.28 6.74 -52.48 -0.35 0.93 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.38 2.13 9.06 45.56 0.41 2.54 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -31.83 320.45 -8.69 -40.52 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.28 Total: 1.43 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.36 Total: -23.32 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.40 Total: -35.13 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.25 Total: -5.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.83 -8.69 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034306325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.311 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds