Wall clock time and date at job start Mon Mar 30 2020 07:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47445 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46873 * 119.99886 * 3 2 1 7 7 C 1.37881 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47563 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47129 * 180.02562 * 12 11 10 14 14 N 1.46490 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.39972 * 120.00016 * 180.02562 * 14 13 12 16 16 C 1.38719 * 120.08833 * 0.29319 * 15 14 13 17 17 C 1.38221 * 119.97857 * 180.30054 * 16 15 14 18 18 C 1.38253 * 120.16417 * 359.67634 * 17 16 15 19 19 C 1.38290 * 120.17578 * 0.02796 * 18 17 16 20 20 C 1.38504 * 120.01822 * 359.97438 * 19 18 17 21 21 O 1.36008 * 120.07819 * 180.02562 * 20 19 18 22 22 H 0.96996 * 120.00099 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47031 * 60.00330 * 9 7 2 24 24 H 1.09001 * 109.47435 * 300.00493 * 9 7 2 25 25 H 1.09008 * 109.46850 * 59.99879 * 10 9 7 26 26 H 1.09001 * 109.47190 * 300.00623 * 10 9 7 27 27 H 1.09000 * 109.46871 * 60.00336 * 11 10 9 28 28 H 1.09001 * 109.47477 * 300.00571 * 11 10 9 29 29 H 1.08995 * 109.47245 * 59.99841 * 12 11 10 30 30 H 1.09000 * 109.46976 * 300.00079 * 12 11 10 31 31 H 1.09000 * 109.46937 * 59.99638 * 13 12 11 32 32 H 1.09000 * 109.46390 * 299.99953 * 13 12 11 33 33 H 0.96998 * 120.00631 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.01448 * 0.02562 * 16 15 14 35 35 H 1.08011 * 119.92109 * 179.70022 * 17 16 15 36 36 H 1.08000 * 119.91566 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.98832 * 180.02562 * 19 18 17 38 38 H 0.96700 * 114.00317 * 90.00100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1501 0.0008 13 6 1.7096 -7.4751 0.0008 14 7 2.6616 -8.5885 0.0020 15 6 2.1950 -9.9082 0.0017 16 6 0.8316 -10.1638 -0.0059 17 6 0.3734 -11.4679 0.0000 18 6 1.2708 -12.5195 0.0069 19 6 2.6314 -12.2723 0.0083 20 6 3.0987 -10.9685 0.0024 21 8 4.4366 -10.7240 0.0033 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8897 28 1 0.8539 -5.0447 0.8903 29 1 3.1012 -6.0919 0.8907 30 1 3.1013 -6.0927 -0.8892 31 1 1.0833 -7.5330 -0.8894 32 1 1.0827 -7.5325 0.8906 33 1 3.6152 -8.4114 0.0023 34 1 0.1283 -9.3442 -0.0121 35 1 -0.6884 -11.6658 -0.0010 36 1 0.9083 -13.5369 0.0111 37 1 3.3297 -13.0961 0.0132 38 1 4.8250 -10.6577 -0.8798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034306325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:12 Heat of formation + Delta-G solvation = -68.042386 kcal Electronic energy + Delta-G solvation = -16837.744751 eV Core-core repulsion = 14064.084202 eV Total energy + Delta-G solvation = -2773.660548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79694 -37.94051 -37.34608 -36.17708 -34.59286 -32.15897 -30.87000 -29.60289 -27.59548 -25.28506 -23.62872 -22.69245 -22.04446 -21.68461 -19.31553 -18.44520 -17.84588 -17.15325 -16.81354 -16.52710 -16.28523 -15.35656 -15.19259 -15.14356 -14.72590 -14.47140 -13.95995 -13.80751 -13.19360 -13.12283 -13.04643 -12.85381 -12.72917 -12.37483 -12.32842 -11.97993 -11.95010 -11.41416 -11.35810 -11.30633 -10.96817 -10.96111 -10.55487 -9.65843 -8.29016 -8.20763 -6.32192 0.40651 0.66042 1.38872 1.42073 1.50092 2.39635 2.45373 2.86275 3.11914 3.40144 3.88154 4.02785 4.03286 4.22140 4.26813 4.44832 4.52489 4.59354 4.62082 4.69901 4.80450 4.89661 4.96948 5.07324 5.08495 5.29916 5.30212 5.33369 5.38099 5.49703 5.54923 5.70094 5.78190 5.86819 5.92575 6.25385 6.29459 6.75191 6.85483 6.95622 7.37127 8.90888 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.057044 B = 0.002772 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.734271 B =10099.204171 C =10551.049174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.107 4.107 12 C -0.115 4.115 13 C 0.131 3.869 14 N -0.742 5.742 15 C 0.178 3.822 16 C -0.203 4.203 17 C -0.083 4.083 18 C -0.171 4.171 19 C -0.106 4.106 20 C 0.008 3.992 21 O -0.505 6.505 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -24.720 -1.752 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.146 4.146 12 C -0.153 4.153 13 C 0.006 3.994 14 N -0.372 5.372 15 C 0.074 3.926 16 C -0.226 4.226 17 C -0.102 4.102 18 C -0.191 4.191 19 C -0.125 4.125 20 C -0.041 4.041 21 O -0.316 6.316 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.259 -24.457 -1.142 24.852 hybrid contribution 0.524 1.295 -0.470 1.474 sum 4.783 -23.162 -1.612 23.706 Atomic orbital electron populations 1.70092 1.07823 1.27853 1.51706 1.26019 0.95809 1.03463 0.94745 0.85499 0.78289 0.78045 0.79219 1.19094 1.20768 1.19175 1.21734 0.93556 0.92631 1.50536 0.92274 1.19044 0.94583 0.93319 0.94678 1.21448 0.97972 0.93854 1.00418 1.21436 0.97945 0.93419 1.01763 1.21626 0.98353 0.92427 1.02912 1.21310 0.91998 0.84907 1.01143 1.44688 1.09054 1.01679 1.81816 1.18471 0.93449 0.85016 0.95706 1.20834 0.92990 0.98524 1.10289 1.21247 1.00879 0.91546 0.96509 1.21110 0.92263 1.00125 1.05619 1.21435 0.96876 0.95379 0.98832 1.18116 0.82853 0.91525 1.11568 1.84861 1.18202 1.93828 1.34681 0.92749 0.99088 0.99202 0.93272 0.93093 0.92249 0.92475 0.91343 0.90953 0.91994 0.92477 0.76002 0.85530 0.83928 0.83818 0.84196 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.11 4.97 29.84 0.15 1.26 16 10 C -0.10 -4.02 5.15 30.59 0.16 -3.87 16 11 C -0.11 -3.41 5.21 30.59 0.16 -3.25 16 12 C -0.12 -2.81 5.33 30.60 0.16 -2.65 16 13 C 0.13 2.88 4.92 86.38 0.42 3.30 16 14 N -0.74 -15.96 5.73 -338.99 -1.94 -17.90 16 15 C 0.18 3.98 6.67 38.22 0.25 4.23 16 16 C -0.20 -4.24 9.31 22.38 0.21 -4.03 16 17 C -0.08 -1.44 10.04 22.27 0.22 -1.22 16 18 C -0.17 -2.75 10.04 22.29 0.22 -2.53 16 19 C -0.11 -1.89 9.98 22.35 0.22 -1.67 16 20 C 0.01 0.17 6.72 22.59 0.15 0.32 16 21 O -0.51 -9.39 12.75 -93.64 -1.19 -10.58 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.34 7.94 -2.39 -0.02 1.32 16 32 H 0.06 1.29 7.97 -2.39 -0.02 1.27 16 33 H 0.40 8.10 7.84 -92.71 -0.73 7.37 16 34 H 0.13 2.51 6.74 -2.91 -0.02 2.49 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.40 3.96 9.06 -74.06 -0.67 3.29 16 Total: -1.00 -68.11 320.45 1.85 -66.25 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.35 Total: 14.19 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 3.03 Total: -41.23 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.66 Total: -75.30 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.19 Total: -10.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.11 1.85 -66.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034306325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.788 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds