Wall clock time and date at job start Mon Mar 30 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48496 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47093 * 299.99746 * 3 2 1 6 6 H 1.48499 * 109.47068 * 60.00008 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.52999 * 109.47328 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47328 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47113 * 180.02562 * 14 13 12 16 16 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 17 17 C 1.38915 * 120.06984 * 0.02562 * 16 10 9 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 10 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 24 24 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 25 25 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 26 26 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 27 27 H 1.08995 * 109.46987 * 299.99935 * 12 11 10 28 28 H 1.09000 * 109.47190 * 59.99497 * 12 11 10 29 29 H 1.08999 * 109.47171 * 300.00527 * 13 12 11 30 30 H 1.09005 * 109.46533 * 60.00043 * 13 12 11 31 31 H 1.09003 * 109.46843 * 299.99921 * 14 13 12 32 32 H 1.08995 * 109.46755 * 59.99928 * 14 13 12 33 33 H 0.96702 * 113.99822 * 180.02562 * 15 14 13 34 34 H 1.07998 * 120.03739 * 359.69591 * 17 16 10 35 35 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.2450 -5.8818 -3.0351 14 6 1.3147 -7.0134 -3.4765 15 8 1.7790 -7.5565 -4.7140 16 6 2.6568 -4.1435 1.2102 17 6 2.2061 -3.6170 2.4141 18 6 2.6565 -4.1445 3.6083 19 6 3.5547 -5.1960 3.6065 20 6 4.0054 -5.7225 2.4098 21 6 3.5591 -5.1997 1.2120 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.6867 -3.3879 -2.0278 26 1 3.6885 -4.5594 -1.1379 27 1 1.7405 -6.0823 -0.9502 28 1 0.7388 -4.9107 -1.8401 29 1 2.2525 -5.0999 -3.7946 30 1 3.2546 -6.2717 -2.9051 31 1 1.3077 -7.7951 -2.7169 32 1 0.3050 -6.6239 -3.6063 33 1 1.2353 -8.2801 -5.0546 34 1 1.5078 -2.7932 2.4161 35 1 2.3068 -3.7354 4.5447 36 1 3.9050 -5.6070 4.5418 37 1 4.7065 -6.5439 2.4119 38 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035649710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:16 Heat of formation + Delta-G solvation = -34.676992 kcal Electronic energy + Delta-G solvation = -17908.747524 eV Core-core repulsion = 15136.533807 eV Total energy + Delta-G solvation = -2772.213716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.92470 -37.27570 -35.96020 -33.61677 -32.47397 -30.34473 -29.21083 -28.19125 -25.89172 -23.47230 -22.58947 -21.37809 -20.99433 -19.63981 -17.35318 -16.99701 -16.40944 -15.72187 -15.13478 -14.92645 -14.23173 -14.06425 -14.04255 -13.37410 -13.23925 -12.80708 -12.72759 -12.12128 -11.85158 -11.66268 -11.49507 -11.23682 -11.05596 -10.86858 -10.73863 -10.68766 -10.40946 -10.27158 -10.02003 -9.87787 -9.73344 -8.89338 -8.51393 -8.26768 -6.49796 -6.03019 -4.17742 2.10568 2.32770 3.25097 3.33336 3.38379 3.94603 4.29016 4.42121 4.60423 4.98525 5.12448 5.21223 5.34586 5.40295 5.50133 5.57504 5.67256 5.77403 5.82657 5.90818 6.01139 6.09236 6.20235 6.30279 6.37061 6.47214 6.58674 6.65395 6.97964 7.09325 7.18985 7.26700 7.36676 7.51416 7.62171 7.81030 8.15628 8.27868 8.49907 8.91957 9.49329 10.95039 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.007217 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.742163 B = 3878.590822 C = 5633.289011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.250 3.750 10 N -0.611 5.611 11 C 0.129 3.871 12 C -0.135 4.135 13 C -0.116 4.116 14 C 0.076 3.924 15 O -0.578 6.578 16 C 0.238 3.762 17 C -0.187 4.187 18 C -0.078 4.078 19 C -0.205 4.205 20 C -0.079 4.079 21 C -0.220 4.220 22 H 0.263 0.737 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.376 0.624 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -12.543 -1.570 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.315 5.315 11 C 0.004 3.996 12 C -0.174 4.174 13 C -0.155 4.155 14 C -0.002 4.002 15 O -0.383 6.383 16 C 0.132 3.868 17 C -0.210 4.210 18 C -0.096 4.096 19 C -0.226 4.226 20 C -0.098 4.098 21 C -0.243 4.243 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.121 -11.837 -1.691 12.358 hybrid contribution -0.067 0.609 -0.052 0.615 sum 3.054 -11.228 -1.744 11.765 Atomic orbital electron populations 1.69939 1.05994 1.27003 1.50528 1.24956 0.94841 0.99245 0.95024 0.86477 0.80165 0.83414 0.77644 1.19726 1.20957 1.20872 1.21627 0.93668 0.90690 1.50896 0.92203 1.19265 0.87309 0.82453 0.97956 1.47141 1.47612 1.35625 1.01160 1.21218 0.96243 0.95252 0.86888 1.21981 1.00943 0.98871 0.95626 1.21452 0.99319 0.97151 0.97543 1.22239 0.97214 0.95722 0.85028 1.86481 1.56959 1.55040 1.39796 1.17943 0.91176 0.90856 0.86815 1.20917 1.05480 1.03752 0.90841 1.20824 0.96234 0.95509 0.97082 1.20658 1.03700 1.01118 0.97101 1.20676 0.98341 0.98456 0.92330 1.20586 1.04313 1.01458 0.97971 0.92726 0.95223 0.94716 0.90585 0.91856 0.91869 0.91466 0.91100 0.91422 0.93786 0.93610 0.77764 0.85116 0.87153 0.87702 0.87470 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.25 6.16 4.91 -5.20 -0.03 6.14 16 10 N -0.61 -12.74 2.59 -173.13 -0.45 -13.19 16 11 C 0.13 2.23 5.16 -4.04 -0.02 2.21 16 12 C -0.14 -1.98 5.54 -26.73 -0.15 -2.13 16 13 C -0.12 -1.49 5.58 -26.73 -0.15 -1.64 16 14 C 0.08 0.85 7.05 37.16 0.26 1.12 16 15 O -0.58 -6.57 13.66 -35.23 -0.48 -7.05 16 16 C 0.24 4.82 6.55 -83.78 -0.55 4.27 16 17 C -0.19 -3.83 9.21 -39.38 -0.36 -4.19 16 18 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 19 C -0.21 -3.30 10.04 -39.54 -0.40 -3.70 16 20 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 21 C -0.22 -3.87 9.21 -39.38 -0.36 -4.23 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 24 H 0.03 0.91 6.20 -51.93 -0.32 0.59 16 25 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 26 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.38 2.43 9.12 45.56 0.42 2.84 16 34 H 0.13 2.92 6.15 -52.49 -0.32 2.60 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.10 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.79 6.14 -52.48 -0.32 1.47 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -29.88 317.66 -8.46 -38.34 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.06 Total: 4.34 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.97 Total: -18.69 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.29 Total: -38.01 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.48 Total: -7.05 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.88 -8.46 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035649710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.664 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds