Wall clock time and date at job start Mon Mar 30 2020 07:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48496 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47093 * 299.99746 * 3 2 1 6 6 H 1.48499 * 109.47068 * 60.00008 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.52999 * 109.47328 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47328 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47113 * 180.02562 * 14 13 12 16 16 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 17 17 C 1.38915 * 120.06984 * 0.02562 * 16 10 9 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 10 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 24 24 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 25 25 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 26 26 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 27 27 H 1.08995 * 109.46987 * 299.99935 * 12 11 10 28 28 H 1.09000 * 109.47190 * 59.99497 * 12 11 10 29 29 H 1.08999 * 109.47171 * 300.00527 * 13 12 11 30 30 H 1.09005 * 109.46533 * 60.00043 * 13 12 11 31 31 H 1.09003 * 109.46843 * 299.99921 * 14 13 12 32 32 H 1.08995 * 109.46755 * 59.99928 * 14 13 12 33 33 H 0.96702 * 113.99822 * 180.02562 * 15 14 13 34 34 H 1.07998 * 120.03739 * 359.69591 * 17 16 10 35 35 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.2450 -5.8818 -3.0351 14 6 1.3147 -7.0134 -3.4765 15 8 1.7790 -7.5565 -4.7140 16 6 2.6568 -4.1435 1.2102 17 6 2.2061 -3.6170 2.4141 18 6 2.6565 -4.1445 3.6083 19 6 3.5547 -5.1960 3.6065 20 6 4.0054 -5.7225 2.4098 21 6 3.5591 -5.1997 1.2120 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.6867 -3.3879 -2.0278 26 1 3.6885 -4.5594 -1.1379 27 1 1.7405 -6.0823 -0.9502 28 1 0.7388 -4.9107 -1.8401 29 1 2.2525 -5.0999 -3.7946 30 1 3.2546 -6.2717 -2.9051 31 1 1.3077 -7.7951 -2.7169 32 1 0.3050 -6.6239 -3.6063 33 1 1.2353 -8.2801 -5.0546 34 1 1.5078 -2.7932 2.4161 35 1 2.3068 -3.7354 4.5447 36 1 3.9050 -5.6070 4.5418 37 1 4.7065 -6.5439 2.4119 38 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035649710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:15 Heat of formation + Delta-G solvation = -52.849162 kcal Electronic energy + Delta-G solvation = -17909.535528 eV Core-core repulsion = 15136.533807 eV Total energy + Delta-G solvation = -2773.001721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37470 -38.24909 -37.33073 -35.21220 -34.16623 -31.75923 -30.67705 -29.74596 -27.47592 -25.10989 -24.02695 -22.75196 -22.15271 -21.13374 -18.64993 -18.38964 -18.17242 -16.92349 -16.69079 -16.37129 -15.91251 -15.31266 -15.24132 -14.80582 -14.58556 -14.43478 -14.07113 -13.79600 -13.24140 -13.11951 -12.98295 -12.75476 -12.62723 -12.52133 -12.25111 -12.00849 -11.98565 -11.69309 -11.67790 -11.33626 -10.87530 -10.64599 -10.49648 -9.65811 -8.37497 -7.82742 -6.37342 0.71081 0.93285 1.35370 1.37130 1.49254 2.33150 2.55965 3.06081 3.17631 3.38519 3.90307 4.09594 4.14528 4.25068 4.31297 4.39509 4.49100 4.55285 4.68522 4.72295 4.74736 4.79818 4.88474 4.98058 5.03433 5.12643 5.19982 5.25818 5.36318 5.37563 5.60848 5.71181 5.78189 5.90149 6.08123 6.24362 6.51995 6.84102 6.90193 6.96162 7.34797 8.83134 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.007217 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.742163 B = 3878.590822 C = 5633.289011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.269 3.731 10 N -0.622 5.622 11 C 0.127 3.873 12 C -0.119 4.119 13 C -0.112 4.112 14 C 0.078 3.922 15 O -0.594 6.594 16 C 0.211 3.789 17 C -0.220 4.220 18 C -0.082 4.082 19 C -0.197 4.197 20 C -0.073 4.073 21 C -0.218 4.218 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.010 0.990 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.397 0.603 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -14.209 -1.074 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.148 3.852 10 N -0.329 5.329 11 C 0.004 3.996 12 C -0.158 4.158 13 C -0.150 4.150 14 C 0.000 4.000 15 O -0.403 6.403 16 C 0.107 3.893 17 C -0.243 4.243 18 C -0.100 4.100 19 C -0.217 4.217 20 C -0.092 4.092 21 C -0.241 4.241 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.028 0.972 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.247 0.753 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.994 -13.544 -1.196 14.485 hybrid contribution -0.616 1.032 -0.135 1.209 sum 4.379 -12.512 -1.330 13.323 Atomic orbital electron populations 1.70041 1.07364 1.28016 1.51264 1.25758 0.95661 1.02621 0.94566 0.85467 0.78746 0.79248 0.77983 1.19578 1.20010 1.20259 1.21820 0.93144 0.92126 1.50789 0.93384 1.18722 0.87517 0.83415 0.95565 1.46975 1.47738 1.35376 1.02801 1.21355 0.97716 0.95467 0.85089 1.21780 0.99297 0.97901 0.96870 1.21370 1.00122 0.97512 0.95977 1.22151 0.96641 0.95574 0.85589 1.86417 1.57944 1.56191 1.39742 1.18232 0.92632 0.92302 0.86176 1.20842 1.06585 1.04166 0.92697 1.21080 0.96367 0.95953 0.96632 1.21093 1.02024 0.99693 0.98863 1.21161 0.97936 0.98712 0.91370 1.20838 1.03203 1.00298 0.99750 0.92421 0.97361 0.97222 0.92356 0.90047 0.91291 0.93248 0.92100 0.90620 0.92333 0.93441 0.75299 0.88731 0.85410 0.84188 0.83503 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.74 5.46 84.65 0.46 1.20 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.27 14.16 4.91 85.63 0.42 14.58 16 10 N -0.62 -26.99 2.59 -701.65 -1.82 -28.81 16 11 C 0.13 4.48 5.16 86.38 0.45 4.93 16 12 C -0.12 -3.50 5.54 30.59 0.17 -3.33 16 13 C -0.11 -2.75 5.58 30.59 0.17 -2.58 16 14 C 0.08 1.64 7.05 71.98 0.51 2.15 16 15 O -0.59 -12.39 13.66 -148.98 -2.03 -14.42 16 16 C 0.21 8.62 6.55 38.21 0.25 8.87 16 17 C -0.22 -9.29 9.21 22.40 0.21 -9.08 16 18 C -0.08 -2.79 10.04 22.25 0.22 -2.56 16 19 C -0.20 -5.63 10.04 22.29 0.22 -5.41 16 20 C -0.07 -2.05 10.04 22.25 0.22 -1.83 16 21 C -0.22 -7.20 9.21 22.40 0.21 -6.99 16 22 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 23 H 0.01 0.46 8.07 -2.39 -0.02 0.45 16 24 H 0.01 0.56 6.20 -2.39 -0.01 0.54 16 25 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 26 H 0.08 2.53 6.20 -2.39 -0.01 2.52 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.40 4.28 9.12 -74.06 -0.68 3.61 16 34 H 0.09 4.59 6.15 -2.91 -0.02 4.58 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 Total: -1.00 -66.13 317.66 2.57 -63.57 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.36 Total: 17.93 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.75 Total: -30.39 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.53 Total: -83.19 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -2.03 Total: -14.42 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.13 2.57 -63.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035649710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.716 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds