Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38746 * 120.05467 * 359.72752 * 13 12 11 15 15 C 1.38131 * 119.94707 * 179.69741 * 14 13 12 16 16 C 1.38290 * 120.04957 * 0.59675 * 15 14 13 17 17 C 1.38250 * 120.11062 * 359.67603 * 16 15 14 18 18 C 1.50704 * 119.96871 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47036 * 270.02264 * 18 17 16 20 20 N 1.46896 * 109.46893 * 179.97438 * 19 18 17 21 21 C 1.38162 * 120.05723 * 0.02573 * 17 16 15 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08010 * 120.02919 * 359.97292 * 14 13 12 30 30 H 1.07993 * 119.97567 * 180.29505 * 15 14 13 31 31 H 1.07997 * 119.94208 * 179.70200 * 16 15 14 32 32 H 1.09003 * 109.46632 * 30.02434 * 18 17 16 33 33 H 1.08996 * 109.46429 * 150.02007 * 18 17 16 34 34 H 1.08996 * 109.47184 * 299.99748 * 19 18 17 35 35 H 1.09005 * 109.47118 * 60.00026 * 19 18 17 36 36 H 1.00907 * 111.00256 * 56.04803 * 20 19 18 37 37 H 1.00904 * 111.00154 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.02891 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0018 13 6 1.8896 -7.3291 0.0029 14 6 0.5143 -7.5122 0.0092 15 6 -0.0113 -8.7896 0.0041 16 6 0.8323 -9.8855 0.0051 17 6 2.2030 -9.7056 0.0046 18 6 3.1193 -10.9021 0.0052 19 6 3.4293 -11.3063 1.4479 20 7 4.3220 -12.4729 1.4484 21 6 2.7335 -8.4299 0.0035 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 -0.1449 -6.6566 0.0136 30 1 -1.0817 -8.9327 0.0041 31 1 0.4195 -10.8834 0.0060 32 1 2.6335 -11.7319 -0.5083 33 1 4.0467 -10.6496 -0.5088 34 1 3.9150 -10.4765 1.9613 35 1 2.5018 -11.5587 1.9618 36 1 5.1623 -12.2856 0.9221 37 1 4.5421 -12.7593 2.3906 38 1 3.8044 -8.2899 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -42.905104 kcal Electronic energy + Delta-G solvation = -16969.487911 eV Core-core repulsion = 14196.917397 eV Total energy + Delta-G solvation = -2772.570514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05404 -37.85548 -35.53130 -34.03890 -31.95369 -31.83256 -29.94300 -27.64129 -26.86779 -23.71725 -22.78275 -22.39907 -20.78862 -20.13909 -17.66398 -16.47836 -16.21747 -15.88556 -15.78804 -15.72331 -15.03227 -14.50310 -14.40073 -13.78517 -13.43016 -13.21034 -12.92647 -12.54022 -12.23748 -11.86060 -11.78196 -11.58085 -11.33558 -11.00454 -11.00158 -10.63462 -10.60586 -10.41782 -9.78084 -9.54991 -9.19556 -9.08235 -8.83057 -8.40269 -8.06866 -6.05563 -4.08362 1.29944 1.50074 3.31359 3.35436 3.37518 3.49321 3.74304 4.20872 4.42805 4.73863 4.85222 4.90113 4.98330 5.14213 5.29588 5.30493 5.32949 5.45904 5.52217 5.53216 5.62877 5.76285 5.82681 5.95423 6.06242 6.37437 6.47194 6.53100 6.55575 6.60013 6.73506 6.87041 6.96647 7.04913 7.57110 7.67568 7.69063 7.92790 8.34612 8.97606 9.55997 11.05936 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047069 B = 0.003109 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.728276 B = 9004.081203 C = 9464.374793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.108 4.108 11 C 0.059 3.941 12 O -0.317 6.317 13 C 0.142 3.858 14 C -0.213 4.213 15 C -0.077 4.077 16 C -0.163 4.163 17 C -0.049 4.049 18 C -0.077 4.077 19 C 0.065 3.935 20 N -0.854 5.854 21 C -0.157 4.157 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.340 0.660 37 H 0.342 0.658 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 -21.787 1.413 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.016 4.016 12 O -0.230 6.230 13 C 0.096 3.904 14 C -0.232 4.232 15 C -0.095 4.095 16 C -0.181 4.181 17 C -0.049 4.049 18 C -0.114 4.114 19 C -0.066 4.066 20 N -0.383 5.383 21 C -0.176 4.176 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.257 -21.954 1.046 22.219 hybrid contribution 0.743 1.720 0.492 1.937 sum 4.000 -20.234 1.538 20.683 Atomic orbital electron populations 1.69950 1.06085 1.26884 1.50565 1.25026 0.94890 0.99362 0.95167 0.86603 0.79542 0.82849 0.78699 1.20164 1.21241 1.20168 1.21146 0.93113 0.90735 1.51027 0.92506 1.19039 0.93821 0.90835 0.97520 1.21721 0.99889 0.91030 1.01946 1.23208 0.92223 0.85260 1.00865 1.86118 1.37358 1.12006 1.87549 1.19107 0.91823 0.85369 0.94094 1.21393 0.94298 0.98780 1.08721 1.20927 0.99637 0.91851 0.97123 1.20864 0.92704 0.98708 1.05841 1.19509 0.94006 0.93408 0.98026 1.20542 0.98707 0.95302 0.96873 1.21773 0.97312 0.91138 0.96334 1.58748 1.21520 1.37969 1.20076 1.20276 0.99561 0.89916 1.07851 0.92836 0.96317 0.96317 0.92226 0.92196 0.92322 0.92352 0.85174 0.85924 0.86205 0.90058 0.91081 0.95102 0.90764 0.84780 0.84549 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.11 -2.27 5.52 -26.74 -0.15 -2.42 16 11 C 0.06 1.05 4.74 37.16 0.18 1.23 16 12 O -0.32 -5.57 10.14 -19.43 -0.20 -5.77 16 13 C 0.14 2.20 6.69 -39.22 -0.26 1.94 16 14 C -0.21 -2.99 9.04 -39.43 -0.36 -3.35 16 15 C -0.08 -0.92 10.04 -39.60 -0.40 -1.31 16 16 C -0.16 -1.80 9.70 -39.56 -0.38 -2.19 16 17 C -0.05 -0.55 5.13 -104.64 -0.54 -1.09 16 18 C -0.08 -0.68 5.60 -27.88 -0.16 -0.84 16 19 C 0.07 0.54 6.77 -3.83 -0.03 0.51 16 20 N -0.85 -6.06 9.62 -10.37 -0.10 -6.15 16 21 C -0.16 -2.11 9.64 -39.43 -0.38 -2.49 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 28 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 29 H 0.13 1.78 6.30 -52.48 -0.33 1.45 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.34 2.02 8.99 -39.29 -0.35 1.66 16 37 H 0.34 1.93 9.08 -39.29 -0.36 1.57 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -30.53 321.26 -8.78 -39.32 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.02 Total: 0.24 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -3.02 Total: -23.04 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.64 Total: -32.16 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.20 Total: -5.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.53 -8.78 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.589 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds