Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38746 * 120.05467 * 359.72752 * 13 12 11 15 15 C 1.38131 * 119.94707 * 179.69741 * 14 13 12 16 16 C 1.38290 * 120.04957 * 0.59675 * 15 14 13 17 17 C 1.38250 * 120.11062 * 359.67603 * 16 15 14 18 18 C 1.50704 * 119.96871 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47036 * 270.02264 * 18 17 16 20 20 N 1.46896 * 109.46893 * 179.97438 * 19 18 17 21 21 C 1.38162 * 120.05723 * 0.02573 * 17 16 15 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08010 * 120.02919 * 359.97292 * 14 13 12 30 30 H 1.07993 * 119.97567 * 180.29505 * 15 14 13 31 31 H 1.07997 * 119.94208 * 179.70200 * 16 15 14 32 32 H 1.09003 * 109.46632 * 30.02434 * 18 17 16 33 33 H 1.08996 * 109.46429 * 150.02007 * 18 17 16 34 34 H 1.08996 * 109.47184 * 299.99748 * 19 18 17 35 35 H 1.09005 * 109.47118 * 60.00026 * 19 18 17 36 36 H 1.00907 * 111.00256 * 56.04803 * 20 19 18 37 37 H 1.00904 * 111.00154 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.02891 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0018 13 6 1.8896 -7.3291 0.0029 14 6 0.5143 -7.5122 0.0092 15 6 -0.0113 -8.7896 0.0041 16 6 0.8323 -9.8855 0.0051 17 6 2.2030 -9.7056 0.0046 18 6 3.1193 -10.9021 0.0052 19 6 3.4293 -11.3063 1.4479 20 7 4.3220 -12.4729 1.4484 21 6 2.7335 -8.4299 0.0035 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 -0.1449 -6.6566 0.0136 30 1 -1.0817 -8.9327 0.0041 31 1 0.4195 -10.8834 0.0060 32 1 2.6335 -11.7319 -0.5083 33 1 4.0467 -10.6496 -0.5088 34 1 3.9150 -10.4765 1.9613 35 1 2.5018 -11.5587 1.9618 36 1 5.1623 -12.2856 0.9221 37 1 4.5421 -12.7593 2.3906 38 1 3.8044 -8.2899 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -61.583409 kcal Electronic energy + Delta-G solvation = -16970.297864 eV Core-core repulsion = 14196.917397 eV Total energy + Delta-G solvation = -2773.380466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15837 -38.96542 -36.34605 -35.90105 -33.74440 -32.78250 -31.10973 -28.77783 -28.36711 -25.38331 -23.81917 -23.34514 -22.23175 -21.47318 -18.84172 -18.45866 -17.21117 -17.04221 -16.96422 -16.65286 -16.48876 -15.77319 -15.29821 -15.04343 -14.61339 -14.51936 -14.11278 -13.94242 -13.56926 -13.51566 -12.96873 -12.69370 -12.57276 -12.53709 -12.35346 -12.13402 -12.01767 -11.69385 -11.54578 -11.48584 -11.27800 -10.58300 -9.80341 -9.64080 -9.15006 -8.23740 -6.34993 0.32743 0.48721 1.39802 1.42811 1.50820 2.20106 2.41801 2.76660 3.09940 3.55240 3.85012 4.00824 4.01029 4.07191 4.14355 4.23289 4.29845 4.41743 4.43674 4.47394 4.61122 4.69430 4.78865 4.89713 4.96209 5.06409 5.11295 5.19352 5.38301 5.45015 5.50123 5.62736 5.64616 5.78086 5.86114 6.17966 6.19911 6.46492 6.58531 6.80092 7.34293 8.88153 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047069 B = 0.003109 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.728276 B = 9004.081203 C = 9464.374793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.072 3.928 12 O -0.333 6.333 13 C 0.109 3.891 14 C -0.228 4.228 15 C -0.079 4.079 16 C -0.157 4.157 17 C -0.045 4.045 18 C -0.071 4.071 19 C 0.069 3.931 20 N -0.857 5.857 21 C -0.166 4.166 22 H 0.265 0.735 23 H -0.001 1.001 24 H -0.001 1.001 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.347 0.653 37 H 0.351 0.649 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 -23.196 1.429 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.247 6.247 13 C 0.064 3.936 14 C -0.247 4.247 15 C -0.096 4.096 16 C -0.175 4.175 17 C -0.046 4.046 18 C -0.109 4.109 19 C -0.062 4.062 20 N -0.387 5.387 21 C -0.185 4.185 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.891 -23.391 1.065 23.736 hybrid contribution 0.528 2.008 0.490 2.133 sum 4.419 -21.383 1.555 21.890 Atomic orbital electron populations 1.70075 1.07742 1.28034 1.51300 1.25977 0.95824 1.03380 0.94528 0.85471 0.78272 0.77922 0.79222 1.19171 1.20662 1.19161 1.21599 0.93621 0.92137 1.51139 0.92129 1.18902 0.94133 0.92184 0.95574 1.21432 0.98827 0.91284 1.01832 1.22851 0.91671 0.84439 1.01293 1.86033 1.37359 1.12814 1.88524 1.19410 0.92918 0.84698 0.96548 1.21508 0.93781 0.99876 1.09525 1.21256 1.01195 0.91074 0.96118 1.21256 0.92494 0.99804 1.03918 1.19801 0.94784 0.93350 0.96631 1.20541 0.98525 0.94364 0.97454 1.21675 0.97481 0.91319 0.95700 1.58733 1.21884 1.37215 1.20916 1.20471 0.99730 0.90252 1.08057 0.92594 0.98238 0.98220 0.92269 0.92256 0.91959 0.91964 0.85599 0.83426 0.83384 0.89136 0.90507 0.95860 0.90950 0.84009 0.83588 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.54 4.97 29.84 0.15 1.69 16 10 C -0.10 -4.12 5.52 30.59 0.17 -3.95 16 11 C 0.07 2.64 4.74 71.98 0.34 2.98 16 12 O -0.33 -11.90 10.14 -92.43 -0.94 -12.83 16 13 C 0.11 3.38 6.69 22.50 0.15 3.53 16 14 C -0.23 -6.33 9.04 22.37 0.20 -6.13 16 15 C -0.08 -1.72 10.04 22.26 0.22 -1.49 16 16 C -0.16 -3.05 9.70 22.29 0.22 -2.84 16 17 C -0.04 -0.94 5.13 -19.88 -0.10 -1.04 16 18 C -0.07 -1.10 5.60 29.85 0.17 -0.93 16 19 C 0.07 1.01 6.77 86.30 0.58 1.59 16 20 N -0.86 -10.31 9.62 -186.73 -1.80 -12.11 16 21 C -0.17 -4.35 9.64 22.36 0.22 -4.13 16 22 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 24 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.20 7.68 -2.39 -0.02 2.18 16 28 H 0.06 2.20 7.65 -2.39 -0.02 2.18 16 29 H 0.13 3.49 6.30 -2.91 -0.02 3.47 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 33 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.35 3.40 8.99 -89.69 -0.81 2.59 16 37 H 0.35 3.26 9.08 -89.69 -0.81 2.45 16 38 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -65.31 321.26 2.01 -63.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.57 Total: 12.85 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 3.01 Total: -41.31 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -1.51 Total: -68.26 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.94 Total: -12.83 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -65.31 2.01 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.711 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds