Wall clock time and date at job start Mon Mar 30 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47197 * 239.99852 * 3 2 1 5 5 H 1.48499 * 109.47456 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47039 * 119.99723 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47459 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99804 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46847 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 64.99878 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96995 * 119.99714 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46983 * 59.99359 * 9 7 2 24 24 H 1.09001 * 109.46880 * 299.99637 * 9 7 2 25 25 H 1.08998 * 109.47052 * 59.99199 * 10 9 7 26 26 H 1.09001 * 109.46818 * 299.99668 * 10 9 7 27 27 H 1.08998 * 109.47449 * 59.99680 * 11 10 9 28 28 H 1.09008 * 109.47363 * 299.99794 * 11 10 9 29 29 H 1.00893 * 110.99924 * 303.95474 * 12 11 10 30 30 H 1.08997 * 109.47123 * 60.00127 * 13 12 11 31 31 H 1.09000 * 109.47024 * 299.99736 * 13 12 11 32 32 H 1.08999 * 109.46920 * 304.99631 * 14 13 12 33 33 H 1.08998 * 109.47220 * 185.00001 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4350 -6.1036 0.0031 13 6 1.7346 -7.3950 0.0031 14 6 2.7595 -8.5310 0.0044 15 8 3.5005 -8.5027 1.2260 16 6 4.4591 -9.4522 1.3882 17 6 5.2168 -9.4833 2.5499 18 6 6.1903 -10.4498 2.7127 19 6 6.4101 -11.3854 1.7188 20 6 5.6561 -11.3569 0.5601 21 6 4.6814 -10.3924 0.3926 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8713 -3.6039 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 0.8541 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8923 29 1 3.0698 -6.0370 -0.7782 30 1 1.1101 -7.4696 -0.8871 31 1 1.1094 -7.4692 0.8929 32 1 3.4412 -8.4062 -0.8370 33 1 2.2429 -9.4866 -0.0851 34 1 5.0486 -8.7497 3.3246 35 1 6.7807 -10.4741 3.6168 36 1 7.1720 -12.1400 1.8477 37 1 5.8295 -12.0891 -0.2146 38 1 4.0929 -10.3703 -0.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:46 Heat of formation + Delta-G solvation = -29.755363 kcal Electronic energy + Delta-G solvation = -16827.793104 eV Core-core repulsion = 14055.792806 eV Total energy + Delta-G solvation = -2772.000298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19538 -37.74897 -36.24434 -33.60716 -31.76867 -31.14817 -30.05119 -28.63951 -25.79514 -23.49110 -22.53916 -22.23034 -21.42117 -20.01119 -18.48178 -16.51868 -16.27569 -16.01799 -15.88815 -15.23536 -14.71444 -14.51100 -14.02481 -13.94959 -13.59406 -13.24696 -13.06425 -12.62771 -12.23319 -11.78197 -11.72365 -11.46003 -11.38064 -11.04834 -10.87583 -10.79338 -10.54981 -10.48880 -9.66491 -9.30822 -9.19629 -9.03997 -8.32868 -8.31326 -8.16642 -5.96752 -3.98750 1.14931 1.29087 3.10803 3.36081 3.39882 3.42962 3.62119 4.29333 4.50371 4.59827 4.68661 4.85534 4.91988 4.95111 5.14921 5.19255 5.30609 5.37991 5.38933 5.54445 5.70641 5.82350 5.83017 5.93756 6.15189 6.21993 6.33735 6.34221 6.60780 6.73932 6.77599 7.16542 7.28852 7.37580 7.61493 7.71497 7.86777 8.03812 8.47218 9.08276 9.65031 11.14741 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.002898 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.552938 B = 9659.996009 C =10104.876915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.057 3.943 14 C 0.064 3.936 15 O -0.294 6.294 16 C 0.136 3.864 17 C -0.154 4.154 18 C -0.081 4.081 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.215 4.215 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.336 0.664 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -23.724 0.703 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.316 5.316 13 C -0.072 4.072 14 C -0.012 4.012 15 O -0.207 6.207 16 C 0.090 3.910 17 C -0.172 4.172 18 C -0.099 4.099 19 C -0.185 4.185 20 C -0.100 4.100 21 C -0.234 4.234 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.380 -23.430 1.513 24.930 hybrid contribution 0.058 0.766 -1.204 1.428 sum 8.439 -22.664 0.309 24.186 Atomic orbital electron populations 1.69960 1.06060 1.26652 1.51020 1.25033 0.94860 0.99263 0.95394 0.86647 0.79562 0.83093 0.78633 1.20284 1.21322 1.20195 1.21231 0.93044 0.91081 1.50380 0.92709 1.19063 0.94011 0.91374 0.97091 1.21619 0.99181 0.92910 1.00782 1.22144 0.94055 0.90807 0.99917 1.60519 1.20232 1.01008 1.49878 1.22000 0.94611 0.88854 1.01747 1.22894 0.93741 0.98907 0.85619 1.86252 1.46226 1.49021 1.39168 1.19151 0.89337 0.88333 0.94206 1.20520 0.97868 1.01604 0.97238 1.20978 0.96344 0.93798 0.98805 1.21029 1.01819 1.00808 0.94853 1.20927 0.94529 0.97252 0.97294 1.21275 1.03237 0.98711 1.00151 0.92997 0.96842 0.96562 0.92468 0.93693 0.95787 0.91356 0.84611 0.93268 0.89886 0.92116 0.91829 0.85050 0.85506 0.86164 0.86067 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.28 5.41 -26.74 -0.14 -2.42 16 11 C 0.06 1.04 5.68 -3.83 -0.02 1.02 16 12 N -0.69 -10.29 6.45 -113.78 -0.73 -11.02 16 13 C 0.06 0.68 6.07 -3.82 -0.02 0.66 16 14 C 0.06 0.67 5.02 37.16 0.19 0.86 16 15 O -0.29 -3.90 10.08 -19.42 -0.20 -4.09 16 16 C 0.14 1.64 6.69 -39.22 -0.26 1.37 16 17 C -0.15 -1.72 9.99 -39.43 -0.39 -2.12 16 18 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 19 C -0.17 -1.45 10.04 -39.56 -0.40 -1.85 16 20 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 21 C -0.21 -2.18 9.04 -39.44 -0.36 -2.54 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.34 4.69 8.73 -39.30 -0.34 4.35 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 33 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -31.98 322.02 -9.20 -41.18 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.08 Total: -0.55 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.76 Total: -20.71 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.00 Total: -37.72 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.20 Total: -4.09 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.98 -9.20 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.428 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds