Wall clock time and date at job start Mon Mar 30 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47197 * 239.99852 * 3 2 1 5 5 H 1.48499 * 109.47456 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47039 * 119.99723 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47459 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99804 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46847 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 64.99878 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96995 * 119.99714 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46983 * 59.99359 * 9 7 2 24 24 H 1.09001 * 109.46880 * 299.99637 * 9 7 2 25 25 H 1.08998 * 109.47052 * 59.99199 * 10 9 7 26 26 H 1.09001 * 109.46818 * 299.99668 * 10 9 7 27 27 H 1.08998 * 109.47449 * 59.99680 * 11 10 9 28 28 H 1.09008 * 109.47363 * 299.99794 * 11 10 9 29 29 H 1.00893 * 110.99924 * 303.95474 * 12 11 10 30 30 H 1.08997 * 109.47123 * 60.00127 * 13 12 11 31 31 H 1.09000 * 109.47024 * 299.99736 * 13 12 11 32 32 H 1.08999 * 109.46920 * 304.99631 * 14 13 12 33 33 H 1.08998 * 109.47220 * 185.00001 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4350 -6.1036 0.0031 13 6 1.7346 -7.3950 0.0031 14 6 2.7595 -8.5310 0.0044 15 8 3.5005 -8.5027 1.2260 16 6 4.4591 -9.4522 1.3882 17 6 5.2168 -9.4833 2.5499 18 6 6.1903 -10.4498 2.7127 19 6 6.4101 -11.3854 1.7188 20 6 5.6561 -11.3569 0.5601 21 6 4.6814 -10.3924 0.3926 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8713 -3.6039 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 0.8541 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8923 29 1 3.0698 -6.0370 -0.7782 30 1 1.1101 -7.4696 -0.8871 31 1 1.1094 -7.4692 0.8929 32 1 3.4412 -8.4062 -0.8370 33 1 2.2429 -9.4866 -0.0851 34 1 5.0486 -8.7497 3.3246 35 1 6.7807 -10.4741 3.6168 36 1 7.1720 -12.1400 1.8477 37 1 5.8295 -12.0891 -0.2146 38 1 4.0929 -10.3703 -0.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:46 Heat of formation + Delta-G solvation = -49.694657 kcal Electronic energy + Delta-G solvation = -16828.657737 eV Core-core repulsion = 14055.792806 eV Total energy + Delta-G solvation = -2772.864931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98155 -38.60223 -37.52447 -35.51880 -33.46558 -31.93786 -31.03873 -29.82590 -27.53842 -24.69136 -23.77473 -23.24419 -22.37603 -21.70918 -19.26156 -18.50301 -17.31622 -16.99564 -16.70487 -16.52288 -16.40242 -15.51608 -15.28960 -15.18988 -14.52858 -14.33532 -14.19729 -13.94838 -13.71145 -13.25814 -13.13673 -12.66571 -12.58407 -12.41794 -12.39225 -12.24867 -11.84228 -11.65256 -11.53487 -11.37702 -11.08625 -10.55532 -9.91381 -9.36132 -9.09657 -8.20790 -6.32018 0.43299 0.54966 1.39418 1.42945 1.50902 2.31874 2.40688 2.89522 3.12042 3.18151 3.84713 3.99318 4.05138 4.13445 4.23765 4.29845 4.34830 4.39436 4.51907 4.54170 4.62419 4.71256 4.79390 4.85661 4.97660 5.09889 5.12926 5.23110 5.42363 5.50749 5.52128 5.64068 5.74084 5.84943 5.92075 6.02017 6.26362 6.45165 6.58699 6.84563 7.37126 8.91017 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.002898 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.552938 B = 9659.996009 C =10104.876915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.694 5.694 13 C 0.057 3.943 14 C 0.065 3.935 15 O -0.323 6.323 16 C 0.110 3.890 17 C -0.179 4.179 18 C -0.085 4.085 19 C -0.168 4.168 20 C -0.086 4.086 21 C -0.221 4.221 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.010 1.010 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.344 0.656 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -24.925 -0.006 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.056 4.056 12 N -0.326 5.326 13 C -0.072 4.072 14 C -0.010 4.010 15 O -0.237 6.237 16 C 0.064 3.936 17 C -0.197 4.197 18 C -0.103 4.103 19 C -0.186 4.186 20 C -0.104 4.104 21 C -0.240 4.240 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.009 0.991 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.929 -24.657 0.800 26.593 hybrid contribution -0.410 1.061 -0.971 1.495 sum 9.518 -23.596 -0.170 25.445 Atomic orbital electron populations 1.70091 1.07790 1.27882 1.51638 1.26006 0.95824 1.03431 0.94668 0.85483 0.78279 0.77976 0.79212 1.19061 1.20653 1.19268 1.21682 0.93530 0.92496 1.50664 0.92340 1.18966 0.94398 0.93045 0.94792 1.21372 0.98036 0.93106 1.00573 1.21824 0.93887 0.90081 0.99809 1.60412 1.20098 1.01509 1.50572 1.22076 0.95100 0.87667 1.02318 1.22966 0.93601 0.99200 0.85223 1.86197 1.47021 1.50016 1.40440 1.19408 0.89832 0.89090 0.95239 1.20710 0.99088 1.02554 0.97374 1.21281 0.95822 0.93242 0.99925 1.21418 1.01987 1.00833 0.94378 1.21319 0.93769 0.97221 0.98042 1.21506 1.03782 0.98477 1.00207 0.92713 0.98835 0.99133 0.93374 0.93015 0.95227 0.92219 0.83788 0.91121 0.90768 0.91061 0.89468 0.85872 0.83430 0.83567 0.83441 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -4.00 5.41 30.59 0.17 -3.83 16 11 C 0.07 2.57 5.68 86.30 0.49 3.06 16 12 N -0.69 -20.34 6.45 -513.88 -3.32 -23.66 16 13 C 0.06 1.30 6.07 86.30 0.52 1.82 16 14 C 0.07 1.27 5.02 71.98 0.36 1.63 16 15 O -0.32 -8.51 10.08 -92.40 -0.93 -9.44 16 16 C 0.11 2.60 6.69 22.51 0.15 2.76 16 17 C -0.18 -4.03 9.99 22.37 0.22 -3.80 16 18 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 19 C -0.17 -2.51 10.04 22.28 0.22 -2.29 16 20 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 21 C -0.22 -4.12 9.04 22.36 0.20 -3.92 16 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.34 9.18 8.73 -89.70 -0.78 8.40 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.22 7.66 -2.39 -0.02 1.21 16 33 H 0.09 1.28 7.66 -2.39 -0.02 1.26 16 34 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 Total: -1.00 -69.41 322.02 1.94 -67.48 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.24 Total: 12.96 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.63 Total: -36.88 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.03 Total: -81.31 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.93 Total: -9.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.41 1.94 -67.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.783 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds