Wall clock time and date at job start Mon Mar 30 2020 07:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46899 * 269.99730 * 3 2 1 5 5 H 1.48494 * 109.47067 * 29.99437 * 3 2 1 6 6 H 1.48498 * 109.47108 * 149.99780 * 3 2 1 7 7 C 1.37877 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47688 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47598 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00142 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.46922 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47181 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47146 * 59.99729 * 9 7 2 24 24 H 1.09010 * 109.47150 * 300.00266 * 9 7 2 25 25 H 1.09002 * 109.47228 * 59.99559 * 10 9 7 26 26 H 1.08999 * 109.47283 * 300.00058 * 10 9 7 27 27 H 1.00907 * 110.99550 * 303.95134 * 11 10 9 28 28 H 1.08999 * 109.47137 * 59.99621 * 12 11 10 29 29 H 1.08993 * 109.46842 * 299.99645 * 12 11 10 30 30 H 1.08999 * 109.47370 * 59.99952 * 13 12 11 31 31 H 1.09006 * 109.47017 * 299.99794 * 13 12 11 32 32 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 33 33 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0018 13 6 1.6351 -7.3800 0.0018 14 6 2.5979 -8.5691 0.0018 15 8 1.8507 -9.7872 0.0011 16 6 2.5602 -10.9462 0.0016 17 6 1.8988 -12.1657 0.0015 18 6 2.6222 -13.3426 0.0015 19 6 4.0044 -13.3057 0.0019 20 6 4.6660 -12.0916 0.0016 21 6 3.9470 -10.9120 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 0.8735 -4.9842 0.7820 28 1 3.0626 -6.0350 0.8922 29 1 3.0637 -6.0349 -0.8877 30 1 1.0075 -7.4212 -0.8884 31 1 1.0068 -7.4208 0.8916 32 1 3.2259 -8.5281 0.8917 33 1 3.2259 -8.5281 -0.8882 34 1 0.8192 -12.1950 0.0060 35 1 2.1078 -14.2922 0.0018 36 1 4.5682 -14.2269 0.0023 37 1 5.7456 -12.0654 0.0015 38 1 4.4642 -9.9638 0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049900571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:43 Heat of formation + Delta-G solvation = -31.925561 kcal Electronic energy + Delta-G solvation = -16588.687830 eV Core-core repulsion = 13816.593425 eV Total energy + Delta-G solvation = -2772.094405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30610 -37.79286 -36.35573 -33.50072 -32.12033 -31.22546 -30.03708 -28.76743 -25.52501 -23.67525 -22.81922 -22.02641 -21.30758 -20.36946 -18.44542 -16.52901 -16.45609 -16.24060 -15.94771 -15.32325 -14.71899 -14.49467 -14.18338 -13.81348 -13.69080 -13.30042 -13.12887 -12.67420 -12.21722 -11.91558 -11.67908 -11.64932 -11.40788 -11.07161 -10.96738 -10.91638 -10.70413 -10.54231 -10.00026 -9.40524 -9.28848 -9.16125 -8.44926 -8.36168 -7.88034 -6.00439 -4.03250 1.05655 1.18520 2.95093 3.31730 3.37746 3.40795 3.52357 4.41717 4.52099 4.58639 4.69425 4.78006 4.84833 4.98616 5.10357 5.11645 5.24687 5.31399 5.35451 5.42176 5.50520 5.69777 5.73034 6.03695 6.07417 6.13341 6.17704 6.24925 6.30571 6.38989 6.51750 6.95041 7.21422 7.43518 7.70714 7.80020 7.92426 8.06759 8.42142 9.03945 9.60521 11.10997 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.078228 B = 0.002469 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.840638 B =11339.208374 C =11658.679906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.063 3.937 13 C -0.117 4.117 14 C 0.062 3.938 15 O -0.314 6.314 16 C 0.134 3.866 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.211 4.211 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.338 0.662 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -25.258 0.805 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.014 4.014 15 O -0.227 6.227 16 C 0.088 3.912 17 C -0.174 4.174 18 C -0.100 4.100 19 C -0.183 4.183 20 C -0.099 4.099 21 C -0.230 4.230 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.702 -25.087 0.123 25.967 hybrid contribution 1.057 1.066 0.921 1.761 sum 7.759 -24.021 1.044 25.264 Atomic orbital electron populations 1.69973 1.06033 1.26623 1.50568 1.25016 0.94866 0.99261 0.95295 0.86572 0.79762 0.83395 0.78124 1.20608 1.21208 1.19940 1.21168 0.92979 0.91003 1.50971 0.92753 1.19078 0.94034 0.90406 0.97794 1.22173 0.97022 0.88333 0.98691 1.60550 1.19709 1.02046 1.49959 1.21769 0.94664 0.89941 1.00351 1.21522 0.98317 0.91271 1.04367 1.22836 0.95019 0.82109 1.01400 1.86080 1.35984 1.12515 1.88132 1.19088 0.90345 0.86466 0.95260 1.20492 1.00607 0.89754 1.06576 1.20972 0.94053 0.97415 0.97563 1.21058 0.94565 0.97883 1.04751 1.20968 0.99799 0.91940 0.97166 1.21332 0.93060 0.99784 1.08785 0.92961 0.95586 0.96760 0.96586 0.92297 0.84502 0.95699 0.91166 0.89842 0.90948 0.92061 0.91818 0.85183 0.85455 0.86035 0.85860 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 10 C 0.07 1.39 5.62 -3.83 -0.02 1.37 16 11 N -0.69 -12.29 6.50 -113.79 -0.74 -13.03 16 12 C 0.06 0.87 5.69 -3.83 -0.02 0.85 16 13 C -0.12 -1.40 5.84 -26.73 -0.16 -1.55 16 14 C 0.06 0.65 4.74 37.16 0.18 0.83 16 15 O -0.31 -3.81 10.14 -19.42 -0.20 -4.01 16 16 C 0.13 1.50 6.69 -39.22 -0.26 1.24 16 17 C -0.16 -1.54 9.99 -39.43 -0.39 -1.93 16 18 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 19 C -0.16 -1.31 10.04 -39.56 -0.40 -1.70 16 20 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.21 -2.07 9.04 -39.44 -0.36 -2.43 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.34 5.76 8.73 -39.29 -0.34 5.42 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 33 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -31.18 322.09 -9.24 -40.42 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.08 Total: 0.05 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.79 Total: -18.68 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.00 Total: -39.35 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.20 Total: -4.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.18 -9.24 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049900571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.496 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds