Wall clock time and date at job start Mon Mar 30 2020 07:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46899 * 269.99730 * 3 2 1 5 5 H 1.48494 * 109.47067 * 29.99437 * 3 2 1 6 6 H 1.48498 * 109.47108 * 149.99780 * 3 2 1 7 7 C 1.37877 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47688 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47598 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00142 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.46922 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47181 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47146 * 59.99729 * 9 7 2 24 24 H 1.09010 * 109.47150 * 300.00266 * 9 7 2 25 25 H 1.09002 * 109.47228 * 59.99559 * 10 9 7 26 26 H 1.08999 * 109.47283 * 300.00058 * 10 9 7 27 27 H 1.00907 * 110.99550 * 303.95134 * 11 10 9 28 28 H 1.08999 * 109.47137 * 59.99621 * 12 11 10 29 29 H 1.08993 * 109.46842 * 299.99645 * 12 11 10 30 30 H 1.08999 * 109.47370 * 59.99952 * 13 12 11 31 31 H 1.09006 * 109.47017 * 299.99794 * 13 12 11 32 32 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 33 33 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0018 13 6 1.6351 -7.3800 0.0018 14 6 2.5979 -8.5691 0.0018 15 8 1.8507 -9.7872 0.0011 16 6 2.5602 -10.9462 0.0016 17 6 1.8988 -12.1657 0.0015 18 6 2.6222 -13.3426 0.0015 19 6 4.0044 -13.3057 0.0019 20 6 4.6660 -12.0916 0.0016 21 6 3.9470 -10.9120 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 0.8735 -4.9842 0.7820 28 1 3.0626 -6.0350 0.8922 29 1 3.0637 -6.0349 -0.8877 30 1 1.0075 -7.4212 -0.8884 31 1 1.0068 -7.4208 0.8916 32 1 3.2259 -8.5281 0.8917 33 1 3.2259 -8.5281 -0.8882 34 1 0.8192 -12.1950 0.0060 35 1 2.1078 -14.2922 0.0018 36 1 4.5682 -14.2269 0.0023 37 1 5.7456 -12.0654 0.0015 38 1 4.4642 -9.9638 0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049900571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:42 Heat of formation + Delta-G solvation = -51.043140 kcal Electronic energy + Delta-G solvation = -16589.516831 eV Core-core repulsion = 13816.593425 eV Total energy + Delta-G solvation = -2772.923406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04916 -38.58842 -37.71675 -35.34930 -33.61801 -31.93229 -31.09172 -30.17863 -26.97600 -25.19125 -23.61996 -22.87215 -22.62914 -21.85977 -19.20153 -18.51130 -17.48188 -17.07926 -16.69904 -16.67542 -16.42605 -15.49127 -15.33205 -14.96454 -14.83316 -14.40139 -14.30038 -13.95332 -13.64367 -13.20101 -13.01318 -12.77970 -12.54518 -12.48802 -12.36208 -12.30421 -11.94137 -11.68564 -11.56016 -11.41598 -11.25687 -10.57165 -9.94657 -9.32767 -9.16707 -8.20935 -6.32711 0.39934 0.49912 1.40470 1.42297 1.53219 2.13501 2.40609 2.85704 3.12442 3.37333 3.86531 3.89055 3.98938 4.12362 4.14035 4.27553 4.35338 4.41116 4.50572 4.54443 4.57634 4.61493 4.66560 4.77023 5.04380 5.08576 5.09954 5.16506 5.38375 5.43890 5.49307 5.61075 5.65773 5.77316 5.88269 6.11614 6.25298 6.45473 6.51194 6.84744 7.36651 8.91292 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.078228 B = 0.002469 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.840638 B =11339.208374 C =11658.679906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.702 5.702 12 C 0.066 3.934 13 C -0.107 4.107 14 C 0.066 3.934 15 O -0.333 6.333 16 C 0.106 3.894 17 C -0.173 4.173 18 C -0.084 4.084 19 C -0.165 4.165 20 C -0.087 4.087 21 C -0.222 4.222 22 H 0.264 0.736 23 H -0.006 1.006 24 H -0.008 1.008 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.340 0.660 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 -26.231 0.967 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.045 4.045 11 N -0.333 5.333 12 C -0.063 4.063 13 C -0.145 4.145 14 C -0.009 4.009 15 O -0.248 6.248 16 C 0.061 3.939 17 C -0.192 4.192 18 C -0.102 4.102 19 C -0.183 4.183 20 C -0.105 4.105 21 C -0.241 4.241 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.010 0.990 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.721 -26.089 0.285 27.509 hybrid contribution 0.411 1.253 0.868 1.578 sum 9.131 -24.836 1.152 26.486 Atomic orbital electron populations 1.70112 1.07866 1.27840 1.51390 1.26020 0.95813 1.03523 0.94639 0.85387 0.78601 0.78151 0.78522 1.19740 1.20732 1.18619 1.21618 0.93599 0.92196 1.50934 0.91986 1.18946 0.94391 0.92408 0.95093 1.21786 0.95587 0.88131 0.98991 1.60446 1.20485 1.01965 1.50418 1.21799 0.94297 0.89016 1.01218 1.21360 0.98247 0.91126 1.03786 1.22767 0.94482 0.81248 1.02424 1.86024 1.36885 1.13157 1.88719 1.19375 0.91153 0.86371 0.96976 1.20736 1.01069 0.90186 1.07190 1.21318 0.94488 0.97807 0.96550 1.21450 0.94690 0.98807 1.03369 1.21319 1.01046 0.91693 0.96458 1.21527 0.92681 1.00862 1.09005 0.92726 0.98784 0.99002 0.95973 0.92153 0.84208 0.94353 0.90597 0.90956 0.91052 0.90897 0.90906 0.85047 0.82992 0.83475 0.83656 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.57 5.23 29.85 0.16 1.73 16 10 C 0.08 3.52 5.62 86.30 0.49 4.01 16 11 N -0.70 -24.79 6.50 -513.91 -3.34 -28.14 16 12 C 0.07 1.74 5.69 86.30 0.49 2.23 16 13 C -0.11 -2.50 5.84 30.59 0.18 -2.32 16 14 C 0.07 1.34 4.74 71.98 0.34 1.68 16 15 O -0.33 -8.07 10.14 -92.40 -0.94 -9.01 16 16 C 0.11 2.33 6.69 22.51 0.15 2.48 16 17 C -0.17 -3.34 9.99 22.37 0.22 -3.12 16 18 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 19 C -0.17 -2.22 10.04 22.28 0.22 -2.00 16 20 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 21 C -0.22 -4.11 9.04 22.36 0.20 -3.91 16 22 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 23 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 24 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.34 11.68 8.73 -89.69 -0.78 10.89 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 33 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 34 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 2.16 6.30 -2.91 -0.02 2.14 16 Total: -1.00 -67.28 322.09 1.87 -65.42 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.24 Total: 14.49 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.59 Total: -32.04 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.06 Total: -85.29 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.94 Total: -9.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.28 1.87 -65.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049900571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.372 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds