Wall clock time and date at job start Mon Mar 30 2020 07:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48503 * 109.47487 * 270.00067 * 3 2 1 5 5 H 1.48497 * 109.47344 * 29.99963 * 3 2 1 6 6 H 1.48505 * 109.47381 * 150.00253 * 3 2 1 7 7 C 1.39863 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99805 * 197.94697 * 7 2 1 9 9 C 1.41138 * 120.00113 * 17.95435 * 7 2 1 10 10 C 1.40884 * 120.15319 * 204.60169 * 9 7 2 11 11 C 1.36346 * 119.83264 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16150 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84211 * 179.97438 * 12 11 10 14 14 C 1.46493 * 119.99997 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47316 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47555 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47217 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.46935 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.46974 * 179.97438 * 18 17 16 20 20 C 1.39569 * 120.31202 * 0.24684 * 12 11 10 21 21 C 1.36335 * 120.16677 * 359.48967 * 20 12 11 22 22 H 0.97003 * 120.00283 * 359.97438 * 1 2 3 23 23 H 1.07993 * 120.08446 * 359.97438 * 10 9 7 24 24 H 1.08000 * 119.91460 * 179.97438 * 11 10 9 25 25 H 0.96996 * 119.99825 * 359.97438 * 13 12 11 26 26 H 1.09004 * 109.47133 * 299.99825 * 14 13 12 27 27 H 1.08998 * 109.47560 * 60.00015 * 14 13 12 28 28 H 1.09004 * 109.46902 * 299.99998 * 15 14 13 29 29 H 1.09007 * 109.46998 * 59.99515 * 15 14 13 30 30 H 1.09004 * 109.47124 * 299.99997 * 16 15 14 31 31 H 1.09006 * 109.46734 * 59.99831 * 16 15 14 32 32 H 1.08990 * 109.47269 * 299.99870 * 17 16 15 33 33 H 1.08997 * 109.47115 * 60.00327 * 17 16 15 34 34 H 1.09004 * 109.47144 * 299.99913 * 18 17 16 35 35 H 1.08993 * 109.47083 * 59.99648 * 18 17 16 36 36 H 0.96699 * 114.00070 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.91354 * 179.72861 * 20 12 11 38 38 H 1.07995 * 120.08758 * 180.23557 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5406 1.4403 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2877 9 6 1.3542 -2.4036 -0.3779 10 6 1.8267 -3.6472 0.0858 11 6 1.1902 -4.7951 -0.2832 12 6 0.0734 -4.7402 -1.1185 13 7 -0.5695 -5.9134 -1.4906 14 6 -1.7423 -5.8597 -2.3668 15 6 -2.2547 -7.2789 -2.6206 16 6 -3.4799 -7.2229 -3.5352 17 6 -3.9918 -8.6421 -3.7894 18 6 -5.2168 -8.5861 -4.7046 19 8 -5.6946 -9.9116 -4.9425 20 6 -0.3967 -3.5121 -1.5862 21 6 0.2265 -2.3559 -1.2211 22 1 -0.4851 0.8400 0.0004 23 1 2.6915 -3.6913 0.7313 24 1 1.5515 -5.7492 0.0712 25 1 -0.2420 -6.7684 -1.1703 26 1 -2.5254 -5.2702 -1.8900 27 1 -1.4666 -5.3984 -3.3151 28 1 -1.4714 -7.8681 -3.0976 29 1 -2.5303 -7.7407 -1.6724 30 1 -4.2630 -6.6338 -3.0578 31 1 -3.2046 -6.7609 -4.4834 32 1 -3.2087 -9.2307 -4.2670 33 1 -4.2670 -9.1044 -2.8414 34 1 -6.0002 -7.9972 -4.2274 35 1 -4.9413 -8.1239 -5.6524 36 1 -6.4720 -9.9524 -5.5161 37 1 -1.2588 -3.4775 -2.2358 38 1 -0.1406 -1.4060 -1.5807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:52 Heat of formation + Delta-G solvation = -52.527781 kcal Electronic energy + Delta-G solvation = -16955.249545 eV Core-core repulsion = 14182.261760 eV Total energy + Delta-G solvation = -2772.987785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.08247 -37.52913 -35.99186 -34.27014 -32.82429 -30.27517 -29.42705 -28.17480 -25.44528 -23.79477 -22.16379 -21.38564 -20.58840 -19.81092 -17.59138 -17.17798 -16.26729 -16.03900 -15.00886 -14.94509 -14.78595 -14.34822 -13.81788 -13.30819 -12.89850 -12.69535 -12.44346 -12.01352 -11.96419 -11.91098 -11.58840 -11.21328 -11.10463 -11.02904 -10.93450 -10.72657 -10.65483 -10.41042 -10.27389 -9.66431 -9.25603 -9.19720 -8.49886 -7.46683 -6.61852 -6.35756 -4.00805 2.93658 3.12559 3.16649 3.20069 3.38155 3.82801 4.07295 4.39464 4.67081 4.79010 4.84293 4.95913 5.04434 5.16409 5.39154 5.49865 5.62872 5.69485 5.80389 5.84020 5.93871 6.04506 6.26599 6.30022 6.30671 6.36527 6.96706 6.97001 7.22996 7.28875 7.38601 7.58531 7.71837 7.87343 8.17948 8.32269 8.52710 8.74187 8.83323 9.08583 9.18099 10.39932 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.046636 B = 0.003172 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.255969 B = 8823.800849 C = 9324.665906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.092 3.908 13 N -0.764 5.764 14 C 0.138 3.862 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.120 4.120 18 C 0.074 3.926 19 O -0.578 6.578 20 C -0.164 4.164 21 C -0.125 4.125 22 H 0.276 0.724 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.383 0.617 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.378 0.622 37 H 0.087 0.913 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 -11.299 -7.709 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.399 5.399 14 C 0.013 3.987 15 C -0.165 4.165 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.004 4.004 19 O -0.383 6.383 20 C -0.186 4.186 21 C -0.145 4.145 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.216 0.784 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.106 0.894 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.492 -11.170 -7.408 15.867 hybrid contribution -0.073 0.692 -0.187 0.720 sum -8.566 -10.478 -7.595 15.519 Atomic orbital electron populations 1.69857 1.07357 1.28560 1.37805 1.25795 0.94659 1.00877 0.92765 0.86403 0.80470 0.81221 0.79053 1.19568 1.20610 1.18876 1.19370 0.97917 0.91367 1.41171 0.90941 1.17502 0.92474 0.92004 0.91003 1.20549 1.02677 0.92622 1.04840 1.19816 0.97963 0.97059 1.03391 1.17368 0.95701 0.85729 1.01702 1.43872 1.32945 1.05799 1.57331 1.20991 0.88498 0.95339 0.93901 1.21726 0.97373 0.97548 0.99869 1.21414 0.97739 0.95873 1.00184 1.21529 0.96638 0.97711 0.99863 1.22247 0.96224 0.83481 0.98456 1.86477 1.50532 1.28573 1.72741 1.20096 1.01681 0.91940 1.04910 1.20936 0.98218 0.96422 0.98876 0.91362 0.89049 0.89618 0.78449 0.93580 0.93646 0.91622 0.91607 0.91487 0.91525 0.91266 0.91247 0.93593 0.93616 0.77513 0.89438 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.73 10.96 55.54 0.61 -21.12 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.47 -12.87 9.03 -37.87 -0.34 -13.21 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 10 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 11 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 12 C 0.09 2.06 6.67 -83.69 -0.56 1.50 16 13 N -0.76 -13.62 5.70 -58.50 -0.33 -13.95 16 14 C 0.14 2.06 4.89 -4.04 -0.02 2.04 16 15 C -0.13 -1.42 5.33 -26.73 -0.14 -1.56 16 16 C -0.11 -1.07 5.21 -26.73 -0.14 -1.21 16 17 C -0.12 -1.09 5.58 -26.73 -0.15 -1.24 16 18 C 0.07 0.60 7.05 37.16 0.26 0.86 16 19 O -0.58 -5.13 13.66 -35.23 -0.48 -5.62 16 20 C -0.16 -3.94 9.23 -39.77 -0.37 -4.31 16 21 C -0.12 -3.33 8.64 -39.27 -0.34 -3.67 16 22 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 23 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 24 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.38 6.06 8.47 -40.82 -0.35 5.72 16 26 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 27 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.38 1.57 9.12 45.56 0.42 1.98 16 37 H 0.09 1.91 6.68 -52.49 -0.35 1.56 16 38 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -30.30 316.88 -8.92 -39.22 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.20 Total: 8.99 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -3.25 Total: -26.71 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.28 Total: -35.07 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.48 Total: -5.62 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.30 -8.92 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.306 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds