Wall clock time and date at job start Mon Mar 30 2020 07:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48503 * 109.47487 * 270.00067 * 3 2 1 5 5 H 1.48497 * 109.47344 * 29.99963 * 3 2 1 6 6 H 1.48505 * 109.47381 * 150.00253 * 3 2 1 7 7 C 1.39863 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99805 * 197.94697 * 7 2 1 9 9 C 1.41138 * 120.00113 * 17.95435 * 7 2 1 10 10 C 1.40884 * 120.15319 * 204.60169 * 9 7 2 11 11 C 1.36346 * 119.83264 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16150 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84211 * 179.97438 * 12 11 10 14 14 C 1.46493 * 119.99997 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47316 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47555 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47217 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.46935 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.46974 * 179.97438 * 18 17 16 20 20 C 1.39569 * 120.31202 * 0.24684 * 12 11 10 21 21 C 1.36335 * 120.16677 * 359.48967 * 20 12 11 22 22 H 0.97003 * 120.00283 * 359.97438 * 1 2 3 23 23 H 1.07993 * 120.08446 * 359.97438 * 10 9 7 24 24 H 1.08000 * 119.91460 * 179.97438 * 11 10 9 25 25 H 0.96996 * 119.99825 * 359.97438 * 13 12 11 26 26 H 1.09004 * 109.47133 * 299.99825 * 14 13 12 27 27 H 1.08998 * 109.47560 * 60.00015 * 14 13 12 28 28 H 1.09004 * 109.46902 * 299.99998 * 15 14 13 29 29 H 1.09007 * 109.46998 * 59.99515 * 15 14 13 30 30 H 1.09004 * 109.47124 * 299.99997 * 16 15 14 31 31 H 1.09006 * 109.46734 * 59.99831 * 16 15 14 32 32 H 1.08990 * 109.47269 * 299.99870 * 17 16 15 33 33 H 1.08997 * 109.47115 * 60.00327 * 17 16 15 34 34 H 1.09004 * 109.47144 * 299.99913 * 18 17 16 35 35 H 1.08993 * 109.47083 * 59.99648 * 18 17 16 36 36 H 0.96699 * 114.00070 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.91354 * 179.72861 * 20 12 11 38 38 H 1.07995 * 120.08758 * 180.23557 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5406 1.4403 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2877 9 6 1.3542 -2.4036 -0.3779 10 6 1.8267 -3.6472 0.0858 11 6 1.1902 -4.7951 -0.2832 12 6 0.0734 -4.7402 -1.1185 13 7 -0.5695 -5.9134 -1.4906 14 6 -1.7423 -5.8597 -2.3668 15 6 -2.2547 -7.2789 -2.6206 16 6 -3.4799 -7.2229 -3.5352 17 6 -3.9918 -8.6421 -3.7894 18 6 -5.2168 -8.5861 -4.7046 19 8 -5.6946 -9.9116 -4.9425 20 6 -0.3967 -3.5121 -1.5862 21 6 0.2265 -2.3559 -1.2211 22 1 -0.4851 0.8400 0.0004 23 1 2.6915 -3.6913 0.7313 24 1 1.5515 -5.7492 0.0712 25 1 -0.2420 -6.7684 -1.1703 26 1 -2.5254 -5.2702 -1.8900 27 1 -1.4666 -5.3984 -3.3151 28 1 -1.4714 -7.8681 -3.0976 29 1 -2.5303 -7.7407 -1.6724 30 1 -4.2630 -6.6338 -3.0578 31 1 -3.2046 -6.7609 -4.4834 32 1 -3.2087 -9.2307 -4.2670 33 1 -4.2670 -9.1044 -2.8414 34 1 -6.0002 -7.9972 -4.2274 35 1 -4.9413 -8.1239 -5.6524 36 1 -6.4720 -9.9524 -5.5161 37 1 -1.2588 -3.4775 -2.2358 38 1 -0.1406 -1.4060 -1.5807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:52 Heat of formation + Delta-G solvation = -72.157642 kcal Electronic energy + Delta-G solvation = -16956.100760 eV Core-core repulsion = 14182.261760 eV Total energy + Delta-G solvation = -2773.838999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80841 -38.29490 -37.24806 -35.68422 -34.41838 -31.58537 -31.34558 -29.73922 -26.80938 -25.34704 -23.49120 -22.50976 -21.89612 -21.52481 -19.14979 -18.23253 -17.72673 -17.02434 -16.80275 -16.35041 -15.84100 -15.62210 -15.10361 -14.53236 -14.45798 -14.31744 -13.95394 -13.59474 -13.32551 -13.25905 -12.86615 -12.74926 -12.57991 -12.37610 -12.21604 -11.94037 -11.78400 -11.56890 -11.52723 -11.17003 -11.04979 -10.86878 -10.28510 -9.40953 -8.54832 -8.16271 -6.00615 1.10557 1.18355 1.40403 1.53137 1.59298 2.27744 2.83910 2.87495 3.37895 3.84798 3.96344 4.06093 4.15273 4.25082 4.43279 4.48291 4.52111 4.56814 4.66647 4.79258 4.86422 4.92873 5.03377 5.06615 5.14815 5.17068 5.28677 5.38191 5.41311 5.46548 5.69378 5.80531 5.96724 6.19055 6.39310 6.67403 6.87564 6.89522 7.08540 7.15893 7.33171 8.48737 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.046636 B = 0.003172 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.255969 B = 8823.800849 C = 9324.665906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.109 3.891 13 N -0.754 5.754 14 C 0.134 3.866 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.118 4.118 18 C 0.072 3.928 19 O -0.599 6.599 20 C -0.176 4.176 21 C -0.144 4.144 22 H 0.282 0.718 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.397 0.603 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.105 0.895 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -12.376 -8.313 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.030 3.970 10 C -0.216 4.216 11 C -0.189 4.189 12 C 0.010 3.990 13 N -0.390 5.390 14 C 0.009 3.991 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.006 4.006 19 O -0.408 6.408 20 C -0.198 4.198 21 C -0.165 4.165 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.136 0.864 25 H 0.231 0.769 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.123 0.877 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.038 -12.301 -8.030 17.248 hybrid contribution 0.000 0.827 -0.038 0.828 sum -9.038 -11.474 -8.069 16.687 Atomic orbital electron populations 1.69920 1.08768 1.29790 1.38543 1.26632 0.95483 1.04158 0.91870 0.85272 0.79018 0.76488 0.79259 1.18941 1.19522 1.18473 1.19592 0.98013 0.92742 1.43304 0.91392 1.17842 0.93626 0.93111 0.92375 1.20773 1.03087 0.92871 1.04908 1.20127 0.97880 0.97700 1.03182 1.17495 0.94965 0.86747 0.99822 1.43961 1.33129 1.04904 1.56968 1.21166 0.87137 0.97844 0.92930 1.21632 0.98189 0.94913 1.00642 1.21350 0.96980 0.96283 1.00013 1.21476 0.97074 0.97150 0.99843 1.22265 0.96064 0.83431 0.98816 1.86419 1.51827 1.29039 1.73522 1.20257 1.02210 0.91893 1.05415 1.20875 0.98979 0.96713 0.99890 0.90752 0.88433 0.86388 0.76889 0.94271 0.93897 0.90946 0.91156 0.91166 0.91001 0.91731 0.91834 0.92705 0.92624 0.75319 0.87743 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.52 10.96 21.81 0.24 -46.28 16 2 C 0.03 1.62 5.13 85.23 0.44 2.06 16 3 Si 0.98 40.52 29.60 68.60 2.03 42.55 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.51 -28.79 9.03 23.38 0.21 -28.58 16 8 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 9 C 0.03 1.89 5.57 -21.27 -0.12 1.77 16 10 C -0.20 -10.00 9.74 22.48 0.22 -9.79 16 11 C -0.17 -7.44 9.82 22.15 0.22 -7.22 16 12 C 0.11 4.73 6.67 38.67 0.26 4.99 16 13 N -0.75 -25.01 5.70 -339.00 -1.93 -26.95 16 14 C 0.13 3.69 4.89 86.38 0.42 4.11 16 15 C -0.12 -2.28 5.33 30.59 0.16 -2.12 16 16 C -0.11 -1.77 5.21 30.59 0.16 -1.61 16 17 C -0.12 -1.89 5.58 30.60 0.17 -1.72 16 18 C 0.07 1.01 7.05 71.98 0.51 1.52 16 19 O -0.60 -9.52 13.66 -148.98 -2.03 -11.55 16 20 C -0.18 -8.41 9.23 22.15 0.20 -8.20 16 21 C -0.14 -7.95 8.64 22.47 0.19 -7.75 16 22 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 23 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 24 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 25 H 0.40 11.26 8.47 -92.71 -0.79 10.48 16 26 H 0.04 1.16 7.94 -2.39 -0.02 1.14 16 27 H 0.04 1.23 7.91 -2.39 -0.02 1.21 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.40 2.53 9.12 -74.06 -0.68 1.86 16 37 H 0.10 4.52 6.68 -2.91 -0.02 4.50 16 38 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -65.94 316.88 0.94 -65.00 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.41 Total: 29.77 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 3.05 Total: -52.54 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.69 Total: -73.23 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -2.03 Total: -11.55 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -65.94 0.94 -65.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.154 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds