Wall clock time and date at job start Mon Mar 30 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47340 * 239.99839 * 2 1 3 5 5 H 1.08000 * 119.99747 * 240.00042 * 4 2 1 6 6 C 1.37878 * 119.99979 * 59.99914 * 4 2 1 7 7 N 1.31518 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00122 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46967 * 119.99971 * 8 6 4 11 11 H 1.48497 * 109.47132 * 240.00055 * 8 6 4 12 12 N 1.46902 * 109.47120 * 119.99858 * 2 1 3 13 13 C 1.46903 * 110.99835 * 275.00374 * 12 2 1 14 14 H 1.08995 * 115.56380 * 9.31040 * 13 12 2 15 15 C 1.53006 * 117.49413 * 223.62268 * 13 12 2 16 16 C 1.52999 * 117.49875 * 155.00128 * 13 12 2 17 17 H 1.09002 * 117.49803 * 214.97547 * 16 13 12 18 18 C 1.50700 * 117.51845 * 0.02562 * 16 13 12 19 19 C 1.38266 * 119.98921 * 239.88532 * 18 16 13 20 20 C 1.38225 * 120.04994 * 179.97438 * 19 18 16 21 21 C 1.38216 * 120.02669 * 0.02562 * 20 19 18 22 22 C 1.38443 * 119.97591 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.02374 * 179.97438 * 22 21 20 24 24 C 1.38180 * 119.98405 * 59.60982 * 18 16 13 25 25 H 1.08997 * 109.47118 * 300.00039 * 1 2 3 26 26 H 1.08998 * 109.47049 * 60.00237 * 1 2 3 27 27 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99882 * 180.02562 * 7 6 4 29 29 H 1.00897 * 111.00223 * 151.05052 * 12 2 1 30 30 H 1.09004 * 117.49624 * 145.02441 * 15 13 12 31 31 H 1.08995 * 117.52013 * 359.97438 * 15 13 12 32 32 H 1.07993 * 119.97529 * 359.97438 * 19 18 16 33 33 H 1.08000 * 119.98239 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.01337 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.01190 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1476 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.6225 1.1992 2.1954 15 6 3.3267 0.1579 3.2349 16 6 1.9929 -0.3909 3.7456 17 1 1.4741 0.1819 4.5143 18 6 1.8477 -1.8879 3.8413 19 6 0.7407 -2.4366 4.4619 20 6 0.6061 -3.8095 4.5498 21 6 1.5784 -4.6353 4.0179 22 6 2.6878 -4.0870 3.3972 23 9 3.6390 -4.8933 2.8773 24 6 2.8183 -2.7115 3.3037 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7090 1.1613 -3.4845 29 1 2.9173 -1.1204 1.0288 30 1 3.6853 1.0919 3.6677 31 1 4.0987 -0.5639 2.9683 32 1 -0.0193 -1.7922 4.8782 33 1 -0.2592 -4.2370 5.0345 34 1 1.4728 -5.7080 4.0864 35 1 3.6805 -2.2827 2.8147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:38 Heat of formation + Delta-G solvation = 1.671203 kcal Electronic energy + Delta-G solvation = -17812.621282 eV Core-core repulsion = 14918.523436 eV Total energy + Delta-G solvation = -2894.097845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.63761 -39.39145 -37.09499 -34.47080 -31.75737 -30.37431 -30.15078 -27.51414 -25.17934 -23.84701 -22.40237 -21.29370 -20.29356 -19.62088 -17.10760 -16.56921 -16.05550 -15.85159 -15.33653 -15.14681 -14.49761 -14.27093 -13.71318 -13.53191 -12.95323 -12.60777 -12.51996 -12.28712 -11.86892 -11.43326 -11.20601 -10.98152 -10.97675 -10.77138 -10.66121 -10.33221 -10.20624 -10.08091 -9.76640 -8.88916 -8.60216 -8.50434 -8.28262 -7.21114 -6.05526 -4.11823 1.41255 1.47128 3.27611 3.35679 3.40443 3.72405 4.33644 4.38364 4.47310 4.80521 4.92874 4.99097 5.19422 5.25804 5.27482 5.37972 5.56821 5.57658 5.77787 5.95493 6.05736 6.16010 6.28205 6.30341 6.39543 6.54822 6.79578 6.85436 7.12986 7.14197 7.20139 7.47976 7.75807 7.85373 8.22581 8.33366 8.59875 8.97841 9.54369 11.00854 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.006289 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.983665 B = 4450.889292 C = 5035.776468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.651 5.651 13 C 0.063 3.937 14 H 0.108 0.892 15 C -0.208 4.208 16 C -0.132 4.132 17 H 0.110 0.890 18 C 0.014 3.986 19 C -0.129 4.129 20 C -0.091 4.091 21 C -0.170 4.170 22 C 0.100 3.900 23 F -0.145 7.145 24 C -0.139 4.139 25 H 0.005 0.995 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.334 0.666 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -4.598 13.939 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.281 5.281 13 C -0.049 4.049 14 H 0.126 0.874 15 C -0.247 4.247 16 C -0.152 4.152 17 H 0.128 0.872 18 C 0.014 3.986 19 C -0.148 4.148 20 C -0.110 4.110 21 C -0.189 4.189 22 C 0.081 3.919 23 F -0.124 7.124 24 C -0.158 4.158 25 H 0.024 0.976 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.643 -4.771 13.886 14.696 hybrid contribution 1.144 -0.094 -1.208 1.667 sum 1.788 -4.865 12.677 13.696 Atomic orbital electron populations 1.21712 0.97717 0.99405 0.99353 1.19167 0.92693 0.92376 0.85140 0.97776 1.21281 1.31494 1.12536 0.90443 0.92208 1.24897 0.94992 0.94964 0.99035 1.69904 1.36639 1.22872 1.23406 0.86477 0.78660 0.79653 0.82852 1.19724 1.20941 1.21051 1.60406 1.31406 1.30916 1.05367 1.22621 0.97855 0.96118 0.88333 0.87404 1.23583 0.91666 1.02656 1.06788 1.21435 1.01747 0.91513 1.00483 0.87238 1.18772 0.92695 0.93415 0.93719 1.20931 0.97740 0.94871 1.01209 1.20857 0.98027 0.93266 0.98801 1.20991 0.94671 1.00584 1.02620 1.17655 0.87786 0.88263 0.98244 1.91473 1.62919 1.73122 1.84840 1.20915 1.01445 0.91157 1.02289 0.97611 0.90109 0.95018 0.92949 0.84628 0.88828 0.88661 0.85841 0.85555 0.85462 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.32 2.50 -68.86 -0.17 5.14 16 3 H 0.00 0.12 7.73 -51.93 -0.40 -0.28 16 4 C -0.52 -14.19 8.59 -34.44 -0.30 -14.49 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.65 -13.57 5.43 -100.95 -0.55 -14.12 16 13 C 0.06 1.09 5.97 -67.71 -0.40 0.69 16 14 H 0.11 1.90 7.77 -51.93 -0.40 1.49 16 15 C -0.21 -2.92 9.56 -26.73 -0.26 -3.18 16 16 C -0.13 -1.90 6.04 -91.77 -0.55 -2.46 16 17 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 18 C 0.01 0.22 5.26 -104.63 -0.55 -0.33 16 19 C -0.13 -1.74 9.74 -39.58 -0.39 -2.13 16 20 C -0.09 -1.14 10.04 -39.59 -0.40 -1.53 16 21 C -0.17 -2.29 10.03 -39.51 -0.40 -2.68 16 22 C 0.10 1.54 7.30 -39.42 -0.29 1.25 16 23 F -0.14 -2.33 17.27 2.25 0.04 -2.29 16 24 C -0.14 -2.18 8.39 -39.51 -0.33 -2.51 16 25 H 0.00 0.11 8.07 -51.93 -0.42 -0.31 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.93 7.31 -39.29 -0.29 6.64 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.33 6.13 -51.93 -0.32 1.01 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.13 2.00 5.60 -52.49 -0.29 1.71 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -28.67 295.99 -8.74 -37.41 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.51 Total: 6.16 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.78 Total: -23.31 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.08 Total: -38.77 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.67 -8.74 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.080 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds