Wall clock time and date at job start Mon Mar 30 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47340 * 239.99839 * 2 1 3 5 5 H 1.08000 * 119.99747 * 240.00042 * 4 2 1 6 6 C 1.37878 * 119.99979 * 59.99914 * 4 2 1 7 7 N 1.31518 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00122 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46967 * 119.99971 * 8 6 4 11 11 H 1.48497 * 109.47132 * 240.00055 * 8 6 4 12 12 N 1.46902 * 109.47120 * 119.99858 * 2 1 3 13 13 C 1.46903 * 110.99835 * 275.00374 * 12 2 1 14 14 H 1.08995 * 115.56380 * 9.31040 * 13 12 2 15 15 C 1.53006 * 117.49413 * 223.62268 * 13 12 2 16 16 C 1.52999 * 117.49875 * 155.00128 * 13 12 2 17 17 H 1.09002 * 117.49803 * 214.97547 * 16 13 12 18 18 C 1.50700 * 117.51845 * 0.02562 * 16 13 12 19 19 C 1.38266 * 119.98921 * 239.88532 * 18 16 13 20 20 C 1.38225 * 120.04994 * 179.97438 * 19 18 16 21 21 C 1.38216 * 120.02669 * 0.02562 * 20 19 18 22 22 C 1.38443 * 119.97591 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.02374 * 179.97438 * 22 21 20 24 24 C 1.38180 * 119.98405 * 59.60982 * 18 16 13 25 25 H 1.08997 * 109.47118 * 300.00039 * 1 2 3 26 26 H 1.08998 * 109.47049 * 60.00237 * 1 2 3 27 27 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99882 * 180.02562 * 7 6 4 29 29 H 1.00897 * 111.00223 * 151.05052 * 12 2 1 30 30 H 1.09004 * 117.49624 * 145.02441 * 15 13 12 31 31 H 1.08995 * 117.52013 * 359.97438 * 15 13 12 32 32 H 1.07993 * 119.97529 * 359.97438 * 19 18 16 33 33 H 1.08000 * 119.98239 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.01337 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.01190 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1476 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.6225 1.1992 2.1954 15 6 3.3267 0.1579 3.2349 16 6 1.9929 -0.3909 3.7456 17 1 1.4741 0.1819 4.5143 18 6 1.8477 -1.8879 3.8413 19 6 0.7407 -2.4366 4.4619 20 6 0.6061 -3.8095 4.5498 21 6 1.5784 -4.6353 4.0179 22 6 2.6878 -4.0870 3.3972 23 9 3.6390 -4.8933 2.8773 24 6 2.8183 -2.7115 3.3037 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7090 1.1613 -3.4845 29 1 2.9173 -1.1204 1.0288 30 1 3.6853 1.0919 3.6677 31 1 4.0987 -0.5639 2.9683 32 1 -0.0193 -1.7922 4.8782 33 1 -0.2592 -4.2370 5.0345 34 1 1.4728 -5.7080 4.0864 35 1 3.6805 -2.2827 2.8147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:37 Heat of formation + Delta-G solvation = -13.644457 kcal Electronic energy + Delta-G solvation = -17813.285419 eV Core-core repulsion = 14918.523436 eV Total energy + Delta-G solvation = -2894.761982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82604 -40.54004 -38.40451 -36.25802 -33.63857 -31.49541 -31.29472 -29.30477 -27.28279 -24.94862 -23.51854 -22.75402 -21.81442 -21.02658 -18.57502 -18.22506 -17.20321 -17.02339 -16.85991 -16.51776 -16.02879 -15.79874 -15.21182 -14.73981 -14.47731 -14.09801 -13.98760 -13.44611 -13.33296 -12.95716 -12.87184 -12.67909 -12.52351 -12.27852 -12.24860 -12.07812 -11.85721 -11.70282 -11.16801 -10.89887 -10.57517 -9.70388 -9.47081 -8.79762 -8.15760 -6.29275 0.31589 0.39873 1.38241 1.40625 1.51990 2.39099 2.61143 3.12736 3.15663 3.36771 3.49393 3.78081 3.88235 4.08125 4.14938 4.32492 4.39175 4.49095 4.56920 4.80077 4.84991 4.89686 5.01251 5.10290 5.17130 5.22399 5.23460 5.31735 5.48570 5.51157 5.66674 5.71492 5.85888 6.08118 6.21137 6.45926 6.76814 6.96477 7.41105 8.89947 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.006289 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.983665 B = 4450.889292 C = 5035.776468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.220 3.780 3 H -0.024 1.024 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.650 5.650 13 C 0.027 3.973 14 H 0.101 0.899 15 C -0.190 4.190 16 C -0.111 4.111 17 H 0.137 0.863 18 C -0.006 4.006 19 C -0.131 4.131 20 C -0.087 4.087 21 C -0.170 4.170 22 C 0.072 3.928 23 F -0.155 7.155 24 C -0.155 4.155 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.330 0.670 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -5.265 15.309 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 H -0.007 1.007 4 C -0.577 4.577 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.279 5.279 13 C -0.085 4.085 14 H 0.118 0.882 15 C -0.229 4.229 16 C -0.130 4.130 17 H 0.154 0.846 18 C -0.007 4.007 19 C -0.149 4.149 20 C -0.105 4.105 21 C -0.188 4.188 22 C 0.053 3.947 23 F -0.134 7.134 24 C -0.173 4.173 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.186 -5.436 15.282 16.221 hybrid contribution 1.278 0.107 -1.553 2.014 sum 1.464 -5.329 13.729 14.800 Atomic orbital electron populations 1.21510 0.97660 0.98555 0.99069 1.18917 0.92671 0.90874 0.86371 1.00657 1.21592 1.31653 1.12562 0.91856 0.92852 1.25660 0.95152 0.95644 1.01826 1.70015 1.37383 1.23919 1.24134 0.85507 0.78183 0.78608 0.79331 1.19504 1.20509 1.20346 1.60318 1.31320 1.31475 1.04750 1.22617 1.01518 0.95866 0.88484 0.88153 1.23630 0.91082 1.03579 1.04570 1.21523 1.01528 0.91580 0.98399 0.84571 1.18962 0.93401 0.93594 0.94710 1.21307 0.97445 0.95869 1.00314 1.21289 0.98557 0.92842 0.97794 1.21339 0.93919 1.02015 1.01558 1.17976 0.88680 0.88367 0.99631 1.91439 1.63473 1.73310 1.85201 1.20984 1.01819 0.91627 1.02913 0.95674 0.92506 0.95905 0.92767 0.85124 0.86462 0.88850 0.83524 0.82013 0.83386 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 9.19 71.98 0.66 -4.84 16 2 C 0.22 11.21 2.50 44.17 0.11 11.32 16 3 H -0.02 -1.34 7.73 -2.39 -0.02 -1.36 16 4 C -0.54 -29.99 8.59 25.60 0.22 -29.77 16 5 H 0.05 2.97 7.62 -2.91 -0.02 2.95 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.65 -27.38 5.43 -473.29 -2.57 -29.95 16 13 C 0.03 0.91 5.97 44.92 0.27 1.17 16 14 H 0.10 3.53 7.77 -2.39 -0.02 3.51 16 15 C -0.19 -5.06 9.56 30.60 0.29 -4.77 16 16 C -0.11 -2.97 6.04 -11.54 -0.07 -3.04 16 17 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.01 -0.18 5.26 -19.87 -0.10 -0.28 16 19 C -0.13 -3.15 9.74 22.27 0.22 -2.93 16 20 C -0.09 -1.88 10.04 22.26 0.22 -1.66 16 21 C -0.17 -4.21 10.03 22.31 0.22 -3.99 16 22 C 0.07 2.20 7.30 22.38 0.16 2.37 16 23 F -0.16 -5.02 17.27 44.97 0.78 -4.24 16 24 C -0.15 -4.78 8.39 22.31 0.19 -4.59 16 25 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 14.03 7.31 -89.70 -0.66 13.37 16 30 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.09 2.54 6.13 -2.39 -0.01 2.53 16 32 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.12 3.83 5.60 -2.91 -0.02 3.81 16 Total: -1.00 -62.06 295.99 3.76 -58.29 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.44 Total: 21.92 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 2.84 Total: -39.63 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.33 Total: -82.46 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.06 3.76 -58.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -62.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds