Wall clock time and date at job start Mon Mar 30 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47640 * 2 1 4 4 C 1.50701 * 109.47149 * 240.00288 * 2 1 3 5 5 H 1.08008 * 119.99925 * 335.26362 * 4 2 1 6 6 C 1.37877 * 120.00145 * 155.25718 * 4 2 1 7 7 N 1.31506 * 120.00194 * 355.15601 * 6 4 2 8 8 Si 1.86804 * 119.99903 * 175.15081 * 6 4 2 9 9 H 1.48504 * 109.47089 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47289 * 240.00181 * 8 6 4 11 11 H 1.48495 * 109.47170 * 120.00010 * 8 6 4 12 12 N 1.46903 * 109.47308 * 120.00485 * 2 1 3 13 13 C 1.46896 * 110.99787 * 274.99846 * 12 2 1 14 14 H 1.08994 * 115.55265 * 350.58106 * 13 12 2 15 15 C 1.53008 * 117.49821 * 136.25070 * 13 12 2 16 16 C 1.53006 * 117.49815 * 204.90729 * 13 12 2 17 17 H 1.09003 * 117.49409 * 0.02562 * 16 13 12 18 18 C 1.50697 * 117.49731 * 145.01720 * 16 13 12 19 19 C 1.38274 * 119.98459 * 59.73472 * 18 16 13 20 20 C 1.38219 * 120.04884 * 179.72545 * 19 18 16 21 21 C 1.38219 * 120.02788 * 0.54671 * 20 19 18 22 22 C 1.38431 * 119.97353 * 359.72248 * 21 20 19 23 23 F 1.35097 * 120.02971 * 180.02562 * 22 21 20 24 24 C 1.38178 * 119.99263 * 240.00256 * 18 16 13 25 25 H 1.09001 * 109.46967 * 295.02742 * 1 2 3 26 26 H 1.09006 * 109.47242 * 55.02412 * 1 2 3 27 27 H 1.08994 * 109.47456 * 175.02287 * 1 2 3 28 28 H 0.97007 * 119.99919 * 5.11818 * 7 6 4 29 29 H 1.00902 * 110.99574 * 38.95206 * 12 2 1 30 30 H 1.08991 * 117.49688 * 214.97786 * 15 13 12 31 31 H 1.09001 * 117.49668 * 359.97438 * 15 13 12 32 32 H 1.08005 * 119.97364 * 359.97177 * 19 18 16 33 33 H 1.08007 * 119.98289 * 180.27042 * 20 19 18 34 34 H 1.08000 * 120.01074 * 179.75350 * 21 20 19 35 35 H 1.08001 * 120.00748 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.4113 -1.4455 -1.7210 6 6 3.2845 -0.4218 -1.7302 7 7 4.0020 0.5396 -1.1914 8 14 3.9619 -1.3965 -3.1727 9 1 2.9660 -2.4145 -3.5935 10 1 5.2200 -2.0726 -2.7660 11 1 4.2379 -0.4770 -4.3055 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3468 14 1 1.9233 1.2759 2.1173 15 6 1.5652 -0.2937 3.6912 16 6 3.0689 -0.1154 3.4666 17 1 3.6715 -1.0164 3.3516 18 6 3.7456 1.0340 4.1680 19 6 2.9875 1.9843 4.8268 20 6 3.6071 3.0360 5.4753 21 6 4.9849 3.1450 5.4564 22 6 5.7446 2.1972 4.7924 23 9 7.0913 2.3024 4.7736 24 6 5.1231 1.1409 4.1478 25 1 -0.3633 0.4348 0.9312 26 1 -0.3634 0.5891 -0.8421 27 1 -0.3634 -1.0237 -0.0892 28 1 3.6831 0.9958 -0.3969 29 1 1.4495 -1.4980 1.4099 30 1 1.0661 0.4204 4.3460 31 1 1.1779 -1.3121 3.7239 32 1 1.9106 1.9026 4.8381 33 1 3.0141 3.7753 5.9933 34 1 5.4685 3.9691 5.9599 35 1 5.7148 0.4006 3.6298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:41 Heat of formation + Delta-G solvation = -20.617573 kcal Electronic energy + Delta-G solvation = -17527.742951 eV Core-core repulsion = 14632.678592 eV Total energy + Delta-G solvation = -2895.064359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94772 -40.60837 -38.62360 -36.39128 -33.66921 -31.99273 -31.19206 -29.27993 -26.59427 -24.93139 -23.75305 -22.72020 -22.35375 -21.36161 -18.95093 -18.26348 -17.43579 -17.13443 -16.67569 -16.55171 -16.09582 -15.64263 -14.98273 -14.86052 -14.52950 -14.39848 -14.19721 -13.54113 -13.45327 -13.14712 -12.96151 -12.81298 -12.66233 -12.44709 -12.02252 -11.92940 -11.87159 -11.63184 -11.30637 -10.71069 -10.42965 -9.89187 -9.61726 -8.72629 -8.48278 -6.26419 0.14817 0.21959 1.54383 1.63551 1.78715 2.49166 2.60332 2.99773 3.12326 3.27674 3.57455 3.81482 3.85116 4.04708 4.09234 4.11054 4.24292 4.28402 4.46769 4.49932 4.62336 4.74423 4.78438 4.88520 4.94738 5.09164 5.11975 5.17295 5.20472 5.31635 5.35500 5.58670 5.92847 6.01991 6.24730 6.57712 6.80310 6.87103 7.60242 8.87083 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.005820 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.512190 B = 4810.230163 C = 5724.195591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.191 3.809 3 H 0.009 0.991 4 C -0.596 4.596 5 H 0.042 0.958 6 C -0.019 4.019 7 N -0.931 5.931 8 Si 1.116 2.884 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.282 1.282 12 N -0.660 5.660 13 C 0.036 3.964 14 H 0.086 0.914 15 C -0.166 4.166 16 C -0.130 4.130 17 H 0.096 0.904 18 C -0.022 4.022 19 C -0.136 4.136 20 C -0.079 4.079 21 C -0.163 4.163 22 C 0.080 3.920 23 F -0.151 7.151 24 C -0.171 4.171 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 3.233 14.807 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.085 3.915 3 H 0.027 0.973 4 C -0.635 4.635 5 H 0.061 0.939 6 C -0.220 4.220 7 N -0.568 5.568 8 Si 0.939 3.061 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.208 1.208 12 N -0.290 5.290 13 C -0.075 4.075 14 H 0.104 0.896 15 C -0.204 4.204 16 C -0.150 4.150 17 H 0.114 0.886 18 C -0.022 4.022 19 C -0.154 4.154 20 C -0.097 4.097 21 C -0.181 4.181 22 C 0.061 3.939 23 F -0.130 7.130 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.168 0.832 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.811 3.201 13.568 14.058 hybrid contribution -1.398 0.049 0.987 1.712 sum -3.209 3.250 14.555 15.254 Atomic orbital electron populations 1.22259 0.97737 1.00806 1.00098 1.19287 0.90588 0.93324 0.88334 0.97272 1.22240 1.03363 1.26277 1.11651 0.93947 1.27074 0.94577 0.96193 1.04123 1.70801 1.41821 1.22083 1.22109 0.82954 0.75456 0.74862 0.72781 1.19627 1.21348 1.20785 1.60755 1.57320 1.08690 1.02227 1.22548 1.02004 0.96275 0.86722 0.89614 1.23686 0.93751 1.03614 0.99371 1.21290 0.92799 0.97845 1.03069 0.88565 1.19116 0.91975 0.95490 0.95654 1.21424 1.01408 0.94402 0.98162 1.21391 0.93334 0.97651 0.97293 1.21432 0.95146 0.99622 1.01902 1.17929 0.76795 0.97705 1.01499 1.91455 1.30303 1.96076 1.95179 1.21043 0.95802 0.99545 1.02640 0.93139 0.93729 0.93234 0.92972 0.84858 0.86099 0.87463 0.83233 0.81161 0.82410 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 9.16 71.98 0.66 -5.32 16 2 C 0.19 9.37 2.26 44.17 0.10 9.47 16 3 H 0.01 0.51 6.10 -2.39 -0.01 0.49 16 4 C -0.60 -33.25 8.64 25.60 0.22 -33.03 16 5 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 6 C -0.02 -1.11 5.45 84.66 0.46 -0.65 16 7 N -0.93 -57.99 13.63 21.45 0.29 -57.70 16 8 Si 1.12 51.60 29.91 68.60 2.05 53.66 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.66 -28.84 6.51 -473.30 -3.08 -31.92 16 13 C 0.04 1.31 5.66 44.92 0.25 1.57 16 14 H 0.09 3.32 7.60 -2.39 -0.02 3.30 16 15 C -0.17 -4.34 9.56 30.62 0.29 -4.04 16 16 C -0.13 -4.25 5.97 -11.51 -0.07 -4.32 16 17 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 18 C -0.02 -0.67 5.61 -19.87 -0.11 -0.78 16 19 C -0.14 -3.22 9.29 22.27 0.21 -3.02 16 20 C -0.08 -1.56 10.04 22.26 0.22 -1.34 16 21 C -0.16 -3.71 10.03 22.31 0.22 -3.48 16 22 C 0.08 2.37 7.30 22.37 0.16 2.54 16 23 F -0.15 -4.74 17.27 44.97 0.78 -3.96 16 24 C -0.17 -5.64 9.72 22.31 0.22 -5.42 16 25 H 0.05 1.73 7.99 -2.39 -0.02 1.71 16 26 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.26 16.47 6.66 -92.70 -0.62 15.85 16 29 H 0.33 13.18 8.27 -89.69 -0.74 12.44 16 30 H 0.12 2.45 6.18 -2.39 -0.01 2.44 16 31 H 0.11 2.58 8.09 -2.39 -0.02 2.56 16 32 H 0.15 2.82 6.03 -2.91 -0.02 2.80 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -66.68 300.66 3.39 -63.29 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.51 Total: 24.46 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 2.84 Total: -47.82 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -2.79 Total: -89.62 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.66 kcal Total: -66.68 3.39 -63.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.671 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds