Wall clock time and date at job start Mon Mar 30 2020 07:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47074 * 300.00000 * 3 2 1 6 6 H 1.48500 * 109.46849 * 59.99814 * 3 2 1 7 7 C 1.37875 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99621 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99762 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05880 * 314.67325 * 11 10 9 13 13 C 1.54368 * 110.04570 * 76.14878 * 11 10 9 14 14 C 1.54893 * 104.20019 * 142.90682 * 13 11 10 15 15 C 1.54889 * 102.74599 * 322.02956 * 14 13 11 16 16 C 1.53884 * 110.02934 * 193.25361 * 11 10 9 17 17 H 1.08999 * 110.02567 * 121.38749 * 16 11 10 18 18 C 1.52996 * 110.03166 * 0.02562 * 16 11 10 19 19 C 1.50701 * 109.46709 * 178.89431 * 18 16 11 20 20 C 1.34512 * 125.78752 * 90.00367 * 19 18 16 21 21 C 1.41387 * 106.84426 * 180.29756 * 20 19 18 22 22 C 1.34521 * 106.83365 * 359.56563 * 21 20 19 23 23 O 1.34298 * 108.42492 * 0.43492 * 22 21 20 24 24 H 0.96998 * 119.99525 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47351 * 60.00437 * 9 7 2 26 26 H 1.09001 * 109.47705 * 300.00291 * 9 7 2 27 27 H 1.00897 * 110.99868 * 56.05363 * 10 9 7 28 28 H 1.08998 * 110.51202 * 24.21495 * 13 11 10 29 29 H 1.08999 * 110.57828 * 261.63364 * 13 11 10 30 30 H 1.08997 * 110.75478 * 203.71423 * 14 13 11 31 31 H 1.09000 * 110.75628 * 80.34130 * 14 13 11 32 32 H 1.08997 * 110.48861 * 279.26021 * 15 14 13 33 33 H 1.08997 * 110.59891 * 156.67581 * 15 14 13 34 34 H 1.09000 * 109.46978 * 58.89914 * 18 16 11 35 35 H 1.08991 * 109.47098 * 298.89274 * 18 16 11 36 36 H 1.08002 * 126.58421 * 0.03019 * 20 19 18 37 37 H 1.07989 * 126.58476 * 179.73596 * 21 20 19 38 38 H 1.08000 * 125.78376 * 180.11283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9070 0.0001 12 1 0.6945 -4.8922 0.7284 13 6 0.9473 -5.2070 -1.4076 14 6 1.1329 -6.7360 -1.5720 15 6 2.4973 -6.9905 -0.8844 16 6 2.4911 -6.0411 0.3315 17 1 2.1591 -6.5761 1.2213 18 6 3.8918 -5.4686 0.5573 19 6 4.8406 -6.5859 0.9073 20 6 5.5631 -7.3076 0.0318 21 6 6.3042 -8.2454 0.7871 22 6 5.9975 -8.0342 2.0797 23 8 5.1078 -7.0304 2.1463 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8404 -3.5487 0.7809 28 1 1.5163 -4.6699 -2.1664 29 1 -0.1085 -4.9425 -1.4657 30 1 1.1749 -7.0088 -2.6265 31 1 0.3365 -7.2787 -1.0628 32 1 3.3167 -6.7414 -1.5586 33 1 2.5748 -8.0276 -0.5582 34 1 3.8623 -4.7477 1.3742 35 1 4.2329 -4.9738 -0.3520 36 1 5.5719 -7.1956 -1.0423 37 1 6.9876 -8.9869 0.4007 38 1 6.3950 -8.5826 2.9209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:40 Heat of formation + Delta-G solvation = 2.065551 kcal Electronic energy + Delta-G solvation = -18154.682879 eV Core-core repulsion = 15384.062438 eV Total energy + Delta-G solvation = -2770.620440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.47269 -38.68250 -34.09739 -33.07904 -32.29723 -32.00504 -28.41542 -27.58328 -25.36965 -24.54899 -21.85986 -21.68710 -20.52729 -20.12555 -18.62013 -17.16568 -16.47373 -15.85276 -15.62657 -14.88395 -14.67247 -14.42057 -13.90709 -13.51534 -13.07837 -12.75718 -12.58087 -12.34119 -12.27670 -11.73675 -11.42664 -11.15962 -10.88957 -10.72826 -10.61493 -10.53790 -10.45155 -10.34555 -10.20522 -9.83060 -9.80296 -9.10603 -8.47599 -8.30442 -7.28656 -6.02145 -4.03866 1.83786 2.70435 3.11536 3.31593 3.38982 3.43912 4.43943 4.70843 4.87363 4.92120 5.03948 5.10124 5.19515 5.34130 5.42629 5.57364 5.63750 5.74453 5.82682 5.88936 5.94825 5.96899 6.06579 6.11976 6.22683 6.23953 6.33661 6.41194 6.57729 6.59763 6.62458 6.80797 7.26006 7.32431 7.45046 7.80847 8.15527 8.40223 8.63452 9.05974 9.61235 11.09022 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.005158 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.035728 B = 5426.674579 C = 6264.493786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.685 5.685 11 C 0.086 3.914 12 H 0.034 0.966 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.084 4.084 17 H 0.066 0.934 18 C -0.032 4.032 19 C 0.008 3.992 20 C -0.219 4.219 21 C -0.213 4.213 22 C -0.057 4.057 23 O -0.178 6.178 24 H 0.260 0.740 25 H 0.030 0.970 26 H -0.015 1.015 27 H 0.329 0.671 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -16.473 0.758 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.025 4.025 12 H 0.052 0.948 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.103 4.103 17 H 0.085 0.915 18 C -0.069 4.069 19 C -0.042 4.042 20 C -0.238 4.238 21 C -0.232 4.232 22 C -0.124 4.124 23 O -0.074 6.074 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.002 0.998 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.722 -16.203 0.347 17.953 hybrid contribution 0.187 0.723 0.836 1.121 sum 7.908 -15.481 1.183 17.424 Atomic orbital electron populations 1.69973 1.06082 1.26613 1.51081 1.24982 0.94843 0.99328 0.95396 0.86458 0.80093 0.83475 0.77480 1.19659 1.21022 1.21147 1.21235 0.93516 0.90307 1.50101 0.91960 1.19576 0.90685 0.87373 0.95790 1.61027 1.21045 1.01009 1.48732 1.22100 0.94031 0.90101 0.96241 0.94825 1.22396 1.00534 0.94401 0.97520 1.22475 0.96942 0.96994 0.99880 1.22369 0.97787 0.98136 0.96542 1.21872 0.93792 0.96296 0.98343 0.91502 1.20312 0.91215 0.91795 1.03614 1.22854 1.00562 0.99582 0.81213 1.21561 1.02025 0.99656 1.00527 1.21798 1.04834 1.03202 0.93389 1.23918 0.96109 0.93294 0.99123 1.84038 1.49895 1.42052 1.31433 0.93013 0.95228 0.99768 0.85172 0.90311 0.92331 0.91916 0.92147 0.91330 0.92463 0.89950 0.87059 0.83688 0.83917 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 4.98 5.27 -4.98 -0.03 4.96 16 10 N -0.69 -14.11 5.39 -106.74 -0.57 -14.69 16 11 C 0.09 1.50 3.21 -66.53 -0.21 1.28 16 12 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16 13 C -0.11 -1.80 5.91 -25.02 -0.15 -1.95 16 14 C -0.13 -1.63 6.91 -24.74 -0.17 -1.80 16 15 C -0.11 -1.41 5.44 -25.07 -0.14 -1.55 16 16 C -0.08 -1.21 2.96 -89.50 -0.26 -1.47 16 17 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.03 -0.45 3.93 -27.88 -0.11 -0.56 16 19 C 0.01 0.11 6.19 -35.62 -0.22 -0.11 16 20 C -0.22 -2.76 10.05 -39.70 -0.40 -3.16 16 21 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 22 C -0.06 -0.63 12.09 29.42 0.36 -0.28 16 23 O -0.18 -2.48 10.65 5.71 0.06 -2.42 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.82 7.70 -51.93 -0.40 0.43 16 26 H -0.02 -0.43 8.10 -51.93 -0.42 -0.85 16 27 H 0.33 6.47 6.05 -39.29 -0.24 6.24 16 28 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.86 7.41 -51.93 -0.38 0.48 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.22 6.56 -51.93 -0.34 0.87 16 35 H 0.11 1.64 7.81 -51.93 -0.41 1.23 16 36 H 0.15 1.65 7.92 -52.49 -0.42 1.23 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -30.32 308.36 -8.28 -38.60 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.94 Total: 4.03 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.18 Total: -20.71 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.16 Total: -40.82 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.32 -8.28 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.667 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds