Wall clock time and date at job start Mon Mar 30 2020 07:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47074 * 300.00000 * 3 2 1 6 6 H 1.48500 * 109.46849 * 59.99814 * 3 2 1 7 7 C 1.37875 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99621 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99762 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05880 * 314.67325 * 11 10 9 13 13 C 1.54368 * 110.04570 * 76.14878 * 11 10 9 14 14 C 1.54893 * 104.20019 * 142.90682 * 13 11 10 15 15 C 1.54889 * 102.74599 * 322.02956 * 14 13 11 16 16 C 1.53884 * 110.02934 * 193.25361 * 11 10 9 17 17 H 1.08999 * 110.02567 * 121.38749 * 16 11 10 18 18 C 1.52996 * 110.03166 * 0.02562 * 16 11 10 19 19 C 1.50701 * 109.46709 * 178.89431 * 18 16 11 20 20 C 1.34512 * 125.78752 * 90.00367 * 19 18 16 21 21 C 1.41387 * 106.84426 * 180.29756 * 20 19 18 22 22 C 1.34521 * 106.83365 * 359.56563 * 21 20 19 23 23 O 1.34298 * 108.42492 * 0.43492 * 22 21 20 24 24 H 0.96998 * 119.99525 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47351 * 60.00437 * 9 7 2 26 26 H 1.09001 * 109.47705 * 300.00291 * 9 7 2 27 27 H 1.00897 * 110.99868 * 56.05363 * 10 9 7 28 28 H 1.08998 * 110.51202 * 24.21495 * 13 11 10 29 29 H 1.08999 * 110.57828 * 261.63364 * 13 11 10 30 30 H 1.08997 * 110.75478 * 203.71423 * 14 13 11 31 31 H 1.09000 * 110.75628 * 80.34130 * 14 13 11 32 32 H 1.08997 * 110.48861 * 279.26021 * 15 14 13 33 33 H 1.08997 * 110.59891 * 156.67581 * 15 14 13 34 34 H 1.09000 * 109.46978 * 58.89914 * 18 16 11 35 35 H 1.08991 * 109.47098 * 298.89274 * 18 16 11 36 36 H 1.08002 * 126.58421 * 0.03019 * 20 19 18 37 37 H 1.07989 * 126.58476 * 179.73596 * 21 20 19 38 38 H 1.08000 * 125.78376 * 180.11283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9070 0.0001 12 1 0.6945 -4.8922 0.7284 13 6 0.9473 -5.2070 -1.4076 14 6 1.1329 -6.7360 -1.5720 15 6 2.4973 -6.9905 -0.8844 16 6 2.4911 -6.0411 0.3315 17 1 2.1591 -6.5761 1.2213 18 6 3.8918 -5.4686 0.5573 19 6 4.8406 -6.5859 0.9073 20 6 5.5631 -7.3076 0.0318 21 6 6.3042 -8.2454 0.7871 22 6 5.9975 -8.0342 2.0797 23 8 5.1078 -7.0304 2.1463 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8404 -3.5487 0.7809 28 1 1.5163 -4.6699 -2.1664 29 1 -0.1085 -4.9425 -1.4657 30 1 1.1749 -7.0088 -2.6265 31 1 0.3365 -7.2787 -1.0628 32 1 3.3167 -6.7414 -1.5586 33 1 2.5748 -8.0276 -0.5582 34 1 3.8623 -4.7477 1.3742 35 1 4.2329 -4.9738 -0.3520 36 1 5.5719 -7.1956 -1.0423 37 1 6.9876 -8.9869 0.4007 38 1 6.3950 -8.5826 2.9209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:40 Heat of formation + Delta-G solvation = -15.680797 kcal Electronic energy + Delta-G solvation = -18155.452418 eV Core-core repulsion = 15384.062438 eV Total energy + Delta-G solvation = -2771.389980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.41281 -40.00761 -35.94504 -34.16105 -33.96440 -33.27749 -29.71133 -29.09453 -26.99767 -25.79569 -23.80453 -22.62875 -21.59655 -21.24993 -19.97723 -18.53365 -18.11932 -16.95931 -16.93978 -16.60710 -16.12236 -15.87698 -15.12131 -14.71312 -14.57004 -14.29830 -13.77679 -13.65422 -13.44008 -13.30699 -12.97032 -12.75222 -12.60744 -12.24281 -12.12013 -11.91649 -11.82532 -11.62427 -11.55683 -11.42111 -11.15135 -10.74285 -10.65630 -9.25860 -9.08589 -8.21934 -6.32759 0.90731 1.41111 1.41614 1.55542 1.80999 2.21299 2.40303 3.11759 3.51609 3.60634 3.72823 3.96686 4.09443 4.24477 4.27534 4.46136 4.47195 4.56545 4.60795 4.66107 4.87140 4.92077 4.99811 5.05561 5.08637 5.11368 5.18385 5.21821 5.27831 5.32726 5.34595 5.43248 5.54416 5.65493 5.72707 6.05362 6.33125 6.47220 6.75919 6.91394 7.38450 8.90036 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.005158 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.035728 B = 5426.674579 C = 6264.493786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.677 5.677 11 C 0.080 3.920 12 H 0.017 0.983 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.102 4.102 16 C -0.075 4.075 17 H 0.070 0.930 18 C -0.025 4.025 19 C -0.018 4.018 20 C -0.216 4.216 21 C -0.223 4.223 22 C -0.054 4.054 23 O -0.199 6.199 24 H 0.264 0.736 25 H 0.003 0.997 26 H -0.047 1.047 27 H 0.334 0.666 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.155 0.845 37 H 0.168 0.832 38 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.794 -17.795 0.631 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.310 5.310 11 C -0.030 4.030 12 H 0.035 0.965 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.140 4.140 16 C -0.094 4.094 17 H 0.088 0.912 18 C -0.062 4.062 19 C -0.067 4.067 20 C -0.235 4.235 21 C -0.241 4.241 22 C -0.120 4.120 23 O -0.096 6.096 24 H 0.073 0.927 25 H 0.021 0.979 26 H -0.029 1.029 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.173 0.827 37 H 0.186 0.814 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.605 -17.550 0.217 20.007 hybrid contribution -0.387 1.063 0.905 1.449 sum 9.218 -16.487 1.123 18.922 Atomic orbital electron populations 1.70103 1.07845 1.27849 1.51765 1.25940 0.95735 1.03349 0.94655 0.85299 0.78991 0.78401 0.77688 1.18591 1.20392 1.20446 1.21593 0.93825 0.91446 1.50256 0.91673 1.19201 0.90710 0.89005 0.92997 1.60933 1.20027 1.01063 1.48964 1.22251 0.94419 0.89634 0.96745 0.96527 1.22370 0.99265 0.97263 0.96139 1.22439 0.97481 0.93860 1.01372 1.22326 0.97675 0.98421 0.95535 1.21779 0.92982 0.95184 0.99418 0.91177 1.20091 0.91370 0.92042 1.02721 1.22653 1.01892 1.00443 0.81757 1.21820 1.01345 0.99343 1.01036 1.22150 1.05165 1.03504 0.93316 1.24739 0.94641 0.92068 1.00586 1.84020 1.50911 1.43125 1.31578 0.92696 0.97899 1.02894 0.84563 0.91916 0.93681 0.90010 0.91018 0.90883 0.90776 0.91302 0.87847 0.82733 0.81406 0.75057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.53 -30.68 9.32 25.60 0.24 -30.44 16 8 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 11.34 5.27 85.56 0.45 11.79 16 10 N -0.68 -28.98 5.39 -491.63 -2.65 -31.62 16 11 C 0.08 2.87 3.21 45.68 0.15 3.01 16 12 H 0.02 0.66 8.01 -2.39 -0.02 0.64 16 13 C -0.11 -3.74 5.91 31.71 0.19 -3.55 16 14 C -0.11 -2.77 6.91 31.89 0.22 -2.55 16 15 C -0.10 -2.41 5.44 31.67 0.17 -2.23 16 16 C -0.07 -2.11 2.96 -10.07 -0.03 -2.14 16 17 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.02 -0.70 3.93 29.85 0.12 -0.58 16 19 C -0.02 -0.47 6.19 24.83 0.15 -0.31 16 20 C -0.22 -5.00 10.05 22.19 0.22 -4.77 16 21 C -0.22 -4.33 10.91 22.19 0.24 -4.09 16 22 C -0.05 -1.04 12.09 66.97 0.81 -0.23 16 23 O -0.20 -5.27 10.65 -2.49 -0.03 -5.29 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.00 0.17 7.70 -2.39 -0.02 0.15 16 26 H -0.05 -2.77 8.10 -2.39 -0.02 -2.78 16 27 H 0.33 13.65 6.05 -89.70 -0.54 13.11 16 28 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.68 7.41 -2.39 -0.02 1.66 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.09 6.56 -2.39 -0.02 2.07 16 35 H 0.10 3.05 7.81 -2.39 -0.02 3.03 16 36 H 0.15 3.16 7.92 -2.91 -0.02 3.14 16 37 H 0.17 2.32 8.06 -2.92 -0.02 2.29 16 38 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -66.34 308.36 3.52 -62.82 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.49 Total: 19.89 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 3.39 Total: -35.57 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -2.36 Total: -88.59 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.03 Total: -5.29 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.34 3.52 -62.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.135 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds