Wall clock time and date at job start Mon Mar 30 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47152 * 269.99695 * 3 2 1 5 5 H 1.48494 * 109.47127 * 29.99498 * 3 2 1 6 6 H 1.48499 * 109.47204 * 149.99884 * 3 2 1 7 7 C 1.37880 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00130 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99625 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00203 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.06013 * 326.42098 * 11 10 9 13 13 C 1.53877 * 110.03055 * 87.83567 * 11 10 9 14 14 C 1.54463 * 106.68421 * 119.44251 * 13 11 10 15 15 C 1.54890 * 104.10368 * 23.34437 * 14 13 11 16 16 C 1.54265 * 110.03601 * 205.00041 * 11 10 9 17 17 H 1.09004 * 110.59809 * 335.84438 * 16 11 10 18 18 C 1.53000 * 110.48514 * 98.42755 * 16 11 10 19 19 C 1.50706 * 109.47305 * 181.23165 * 18 16 11 20 20 C 1.34514 * 125.79123 * 89.99968 * 19 18 16 21 21 C 1.41377 * 106.84125 * 180.02562 * 20 19 18 22 22 C 1.34509 * 106.84273 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.78771 * 269.69525 * 19 18 16 24 24 H 0.97004 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47693 * 60.00050 * 9 7 2 26 26 H 1.09007 * 109.47289 * 299.99804 * 9 7 2 27 27 H 1.00904 * 110.99696 * 56.04491 * 10 9 7 28 28 H 1.08999 * 110.03493 * 238.56904 * 13 11 10 29 29 H 1.09003 * 110.03187 * 359.95541 * 13 11 10 30 30 H 1.09003 * 110.40626 * 264.75463 * 14 13 11 31 31 H 1.09003 * 110.65885 * 142.05687 * 14 13 11 32 32 H 1.09002 * 110.75897 * 203.89231 * 15 14 13 33 33 H 1.09006 * 110.75292 * 80.70460 * 15 14 13 34 34 H 1.09002 * 109.47302 * 301.23072 * 18 16 11 35 35 H 1.08997 * 109.46938 * 61.23561 * 18 16 11 36 36 H 1.08004 * 126.57562 * 359.96427 * 20 19 18 37 37 H 1.07999 * 126.57947 * 180.02562 * 21 20 19 38 38 H 1.08005 * 125.79258 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0011 -2.5790 0.0022 11 6 5.4696 -2.6182 0.0022 12 1 5.8661 -1.7760 -0.5647 13 6 5.9980 -2.5766 1.4468 14 6 6.7987 -3.8795 1.6639 15 6 7.2087 -4.3131 0.2346 16 6 5.9628 -3.9459 -0.6092 17 1 5.1987 -4.7178 -0.5172 18 6 6.3490 -3.7488 -2.0765 19 6 6.7982 -5.0643 -2.6588 20 6 6.0063 -5.9688 -3.2622 21 6 6.8366 -7.0445 -3.6524 22 6 8.0863 -6.7328 -3.2646 23 8 8.0580 -5.5296 -2.6685 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6259 -3.0958 -0.7790 28 1 6.6508 -1.7141 1.5809 29 1 5.1648 -2.5264 2.1478 30 1 6.1696 -4.6394 2.1275 31 1 7.6823 -3.6907 2.2736 32 1 7.3990 -5.3857 0.1959 33 1 8.0820 -3.7549 -0.1028 34 1 5.4870 -3.3807 -2.6328 35 1 7.1613 -3.0252 -2.1444 36 1 4.9405 -5.8891 -3.4177 37 1 6.5270 -7.9437 -4.1643 38 1 8.9642 -7.3445 -3.4113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:44 Heat of formation + Delta-G solvation = -2.108997 kcal Electronic energy + Delta-G solvation = -18039.623294 eV Core-core repulsion = 15268.821832 eV Total energy + Delta-G solvation = -2770.801462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.57295 -38.63102 -34.29072 -33.22646 -32.37772 -32.06969 -28.56834 -28.05178 -25.86579 -24.29236 -21.82709 -21.40973 -20.69715 -19.78938 -19.36515 -17.39284 -16.82532 -16.05188 -15.66524 -14.73133 -14.59826 -14.39899 -13.78436 -13.61105 -13.35448 -12.88556 -12.83141 -12.66043 -12.38971 -11.97389 -11.80795 -11.52414 -11.11630 -10.77803 -10.77258 -10.61217 -10.46188 -10.29627 -10.07859 -9.92182 -9.75366 -9.24657 -8.59842 -8.43428 -7.47394 -6.05605 -4.03379 1.72163 2.60810 2.98242 3.28193 3.36092 3.38930 4.42234 4.54562 4.78314 4.80283 4.90680 5.01548 5.06941 5.26199 5.30296 5.37299 5.54640 5.61081 5.70615 5.75187 5.81298 5.86006 5.93665 5.98181 6.05206 6.16158 6.23192 6.29073 6.44689 6.51492 6.55918 6.65073 6.84553 7.02636 7.13801 7.64148 7.93535 8.36131 8.66264 9.02836 9.56670 11.07770 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.004925 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.182932 B = 5683.485630 C = 6226.229807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.086 3.914 12 H 0.039 0.961 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.090 4.090 17 H 0.088 0.912 18 C -0.038 4.038 19 C 0.005 3.995 20 C -0.217 4.217 21 C -0.211 4.211 22 C -0.055 4.055 23 O -0.176 6.176 24 H 0.263 0.737 25 H 0.026 0.974 26 H -0.022 1.022 27 H 0.334 0.666 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.237 -10.900 -4.345 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.303 5.303 11 C -0.025 4.025 12 H 0.057 0.943 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.109 4.109 17 H 0.107 0.893 18 C -0.075 4.075 19 C -0.045 4.045 20 C -0.236 4.236 21 C -0.230 4.230 22 C -0.122 4.122 23 O -0.072 6.072 24 H 0.073 0.927 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.152 0.848 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 17.258 -10.671 -3.535 20.597 hybrid contribution 0.376 0.975 -1.127 1.537 sum 17.635 -9.697 -4.662 20.658 Atomic orbital electron populations 1.69900 1.06170 1.26851 1.51054 1.24905 0.94728 0.98924 0.94757 0.86833 0.80376 0.83923 0.78429 1.20380 1.21173 1.19144 1.21076 0.89021 0.94767 1.50508 0.90317 1.20047 0.96531 0.85167 0.94676 1.60680 1.03905 1.16551 1.49208 1.22171 0.90308 0.94716 0.95303 0.94279 1.22231 0.99367 0.96413 0.97365 1.22337 0.99168 0.97964 0.96282 1.22472 0.96933 1.00450 0.95311 1.22244 0.98170 0.98685 0.91801 0.89336 1.20318 1.01562 0.89676 0.95977 1.22513 0.81398 0.98255 1.02323 1.21640 1.01077 0.95220 1.05629 1.21817 0.93345 1.01357 1.06512 1.23942 0.99920 0.86632 1.01717 1.84021 1.30338 1.30623 1.62214 0.92673 0.95567 1.00401 0.84807 0.92810 0.90181 0.91639 0.92284 0.92109 0.91731 0.88659 0.90155 0.83426 0.83737 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.71 9.87 -34.44 -0.34 -15.05 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.16 3.94 4.34 -4.98 -0.02 3.92 16 10 N -0.67 -13.55 6.15 -106.81 -0.66 -14.21 16 11 C 0.09 1.40 2.82 -66.59 -0.19 1.21 16 12 H 0.04 0.65 7.51 -51.93 -0.39 0.26 16 13 C -0.12 -1.78 6.55 -25.51 -0.17 -1.95 16 14 C -0.12 -1.54 6.85 -24.97 -0.17 -1.71 16 15 C -0.11 -1.41 5.86 -24.74 -0.15 -1.55 16 16 C -0.09 -1.22 2.31 -88.96 -0.21 -1.42 16 17 H 0.09 1.28 7.96 -51.93 -0.41 0.86 16 18 C -0.04 -0.47 5.11 -27.88 -0.14 -0.62 16 19 C 0.01 0.07 6.12 -35.62 -0.22 -0.15 16 20 C -0.22 -2.66 10.81 -39.70 -0.43 -3.09 16 21 C -0.21 -2.27 10.91 -39.71 -0.43 -2.70 16 22 C -0.05 -0.55 12.09 29.41 0.36 -0.20 16 23 O -0.18 -2.19 10.65 5.70 0.06 -2.12 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 26 H -0.02 -0.52 7.50 -51.93 -0.39 -0.91 16 27 H 0.33 6.49 8.31 -39.29 -0.33 6.16 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -31.07 311.85 -8.11 -39.18 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.11 Total: 3.86 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.20 Total: -21.41 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.12 Total: -41.16 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: 0.06 Total: -2.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.07 -8.11 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.069 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds