Wall clock time and date at job start Mon Mar 30 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47152 * 269.99695 * 3 2 1 5 5 H 1.48494 * 109.47127 * 29.99498 * 3 2 1 6 6 H 1.48499 * 109.47204 * 149.99884 * 3 2 1 7 7 C 1.37880 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00130 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99625 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00203 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.06013 * 326.42098 * 11 10 9 13 13 C 1.53877 * 110.03055 * 87.83567 * 11 10 9 14 14 C 1.54463 * 106.68421 * 119.44251 * 13 11 10 15 15 C 1.54890 * 104.10368 * 23.34437 * 14 13 11 16 16 C 1.54265 * 110.03601 * 205.00041 * 11 10 9 17 17 H 1.09004 * 110.59809 * 335.84438 * 16 11 10 18 18 C 1.53000 * 110.48514 * 98.42755 * 16 11 10 19 19 C 1.50706 * 109.47305 * 181.23165 * 18 16 11 20 20 C 1.34514 * 125.79123 * 89.99968 * 19 18 16 21 21 C 1.41377 * 106.84125 * 180.02562 * 20 19 18 22 22 C 1.34509 * 106.84273 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.78771 * 269.69525 * 19 18 16 24 24 H 0.97004 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47693 * 60.00050 * 9 7 2 26 26 H 1.09007 * 109.47289 * 299.99804 * 9 7 2 27 27 H 1.00904 * 110.99696 * 56.04491 * 10 9 7 28 28 H 1.08999 * 110.03493 * 238.56904 * 13 11 10 29 29 H 1.09003 * 110.03187 * 359.95541 * 13 11 10 30 30 H 1.09003 * 110.40626 * 264.75463 * 14 13 11 31 31 H 1.09003 * 110.65885 * 142.05687 * 14 13 11 32 32 H 1.09002 * 110.75897 * 203.89231 * 15 14 13 33 33 H 1.09006 * 110.75292 * 80.70460 * 15 14 13 34 34 H 1.09002 * 109.47302 * 301.23072 * 18 16 11 35 35 H 1.08997 * 109.46938 * 61.23561 * 18 16 11 36 36 H 1.08004 * 126.57562 * 359.96427 * 20 19 18 37 37 H 1.07999 * 126.57947 * 180.02562 * 21 20 19 38 38 H 1.08005 * 125.79258 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0011 -2.5790 0.0022 11 6 5.4696 -2.6182 0.0022 12 1 5.8661 -1.7760 -0.5647 13 6 5.9980 -2.5766 1.4468 14 6 6.7987 -3.8795 1.6639 15 6 7.2087 -4.3131 0.2346 16 6 5.9628 -3.9459 -0.6092 17 1 5.1987 -4.7178 -0.5172 18 6 6.3490 -3.7488 -2.0765 19 6 6.7982 -5.0643 -2.6588 20 6 6.0063 -5.9688 -3.2622 21 6 6.8366 -7.0445 -3.6524 22 6 8.0863 -6.7328 -3.2646 23 8 8.0580 -5.5296 -2.6685 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6259 -3.0958 -0.7790 28 1 6.6508 -1.7141 1.5809 29 1 5.1648 -2.5264 2.1478 30 1 6.1696 -4.6394 2.1275 31 1 7.6823 -3.6907 2.2736 32 1 7.3990 -5.3857 0.1959 33 1 8.0820 -3.7549 -0.1028 34 1 5.4870 -3.3807 -2.6328 35 1 7.1613 -3.0252 -2.1444 36 1 4.9405 -5.8891 -3.4177 37 1 6.5270 -7.9437 -4.1643 38 1 8.9642 -7.3445 -3.4113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:44 Heat of formation + Delta-G solvation = -21.500687 kcal Electronic energy + Delta-G solvation = -18040.464181 eV Core-core repulsion = 15268.821832 eV Total energy + Delta-G solvation = -2771.642349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.43466 -39.85225 -36.01933 -34.28008 -34.03689 -33.27470 -29.99185 -29.32897 -27.29222 -25.50464 -23.30849 -22.64721 -21.66752 -20.86331 -20.65844 -18.94972 -18.21040 -17.04213 -16.95306 -16.48560 -15.80283 -15.50669 -15.34459 -14.94798 -14.67006 -14.36375 -13.89296 -13.72794 -13.68860 -13.45682 -13.20617 -12.76377 -12.74809 -12.19143 -12.06120 -11.88883 -11.79340 -11.61178 -11.54687 -11.35653 -11.30741 -10.81616 -10.79433 -9.30781 -9.11013 -8.30047 -6.34250 0.86249 1.33951 1.36371 1.47595 1.75047 2.15309 2.33927 3.04224 3.47477 3.54118 3.71111 3.94859 4.03771 4.19172 4.26570 4.37433 4.47142 4.53060 4.56199 4.65513 4.77565 4.82697 4.89740 4.96683 4.99618 5.06816 5.09776 5.13009 5.22022 5.28443 5.31945 5.39035 5.50994 5.57443 5.65769 6.01969 6.27420 6.59195 6.69572 6.80364 7.31052 8.86838 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.004925 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.182932 B = 5683.485630 C = 6226.229807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.527 4.527 8 H 0.036 0.964 9 C 0.177 3.823 10 N -0.681 5.681 11 C 0.082 3.918 12 H 0.041 0.959 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.081 4.081 17 H 0.075 0.925 18 C -0.033 4.033 19 C -0.012 4.012 20 C -0.232 4.232 21 C -0.227 4.227 22 C -0.046 4.046 23 O -0.186 6.186 24 H 0.267 0.733 25 H 0.023 0.977 26 H -0.015 1.015 27 H 0.335 0.665 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.183 -10.880 -4.692 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.312 5.312 11 C -0.028 4.028 12 H 0.059 0.941 13 C -0.156 4.156 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.100 4.100 17 H 0.094 0.906 18 C -0.070 4.070 19 C -0.061 4.061 20 C -0.251 4.251 21 C -0.246 4.246 22 C -0.113 4.113 23 O -0.083 6.083 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.003 0.997 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 20.221 -10.675 -3.883 23.193 hybrid contribution -0.584 0.831 -1.037 1.451 sum 19.638 -9.844 -4.920 22.511 Atomic orbital electron populations 1.70055 1.08186 1.28191 1.52422 1.25870 0.95605 1.03258 0.94162 0.85674 0.79360 0.78452 0.79197 1.19046 1.20658 1.17455 1.21361 0.91510 0.93368 1.50320 0.94523 1.19765 0.93500 0.87415 0.94533 1.60587 1.06723 1.14352 1.49537 1.22304 0.87618 0.96396 0.96439 0.94095 1.22239 0.99013 0.98494 0.95895 1.22303 0.99484 0.96292 0.96994 1.22416 0.96430 1.00941 0.94424 1.22109 0.98445 0.96587 0.92822 0.90617 1.20210 1.01675 0.90156 0.94972 1.22441 0.81813 0.98469 1.03420 1.21881 1.01402 0.96029 1.05769 1.22128 0.93523 1.01801 1.07179 1.24747 1.01067 0.85727 0.99730 1.84013 1.30028 1.31616 1.62652 0.92379 0.95915 0.99742 0.84710 0.91678 0.92794 0.92122 0.90114 0.91532 0.90594 0.89215 0.89270 0.83579 0.81826 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.53 -30.91 9.87 25.60 0.25 -30.66 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 9 C 0.18 8.49 4.34 85.56 0.37 8.86 16 10 N -0.68 -27.71 6.15 -491.84 -3.03 -30.74 16 11 C 0.08 2.61 2.82 45.64 0.13 2.74 16 12 H 0.04 1.30 7.51 -2.39 -0.02 1.29 16 13 C -0.12 -3.50 6.55 31.39 0.21 -3.29 16 14 C -0.11 -2.66 6.85 31.74 0.22 -2.44 16 15 C -0.10 -2.33 5.86 31.88 0.19 -2.15 16 16 C -0.08 -2.10 2.31 -9.72 -0.02 -2.12 16 17 H 0.08 2.17 7.96 -2.38 -0.02 2.15 16 18 C -0.03 -0.78 5.11 29.85 0.15 -0.63 16 19 C -0.01 -0.28 6.12 24.83 0.15 -0.13 16 20 C -0.23 -5.51 10.81 22.19 0.24 -5.27 16 21 C -0.23 -4.44 10.91 22.19 0.24 -4.20 16 22 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 23 O -0.19 -4.22 10.65 -2.52 -0.03 -4.24 16 24 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 25 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 26 H -0.02 -0.70 7.50 -2.38 -0.02 -0.72 16 27 H 0.34 13.37 8.31 -89.69 -0.75 12.62 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.56 8.02 -2.38 -0.02 1.54 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -67.85 311.85 2.76 -65.10 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.23 Total: 21.43 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.40 Total: -38.32 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.73 Total: -90.24 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.03 Total: -4.24 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -67.85 2.76 -65.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.596 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds