Wall clock time and date at job start Mon Mar 30 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47050 * 270.00103 * 3 2 1 5 5 H 1.48499 * 109.47015 * 30.00281 * 3 2 1 6 6 H 1.48502 * 109.46628 * 150.00116 * 3 2 1 7 7 C 1.37876 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99833 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01477 * 33.60737 * 11 10 9 13 13 C 1.54263 * 110.07159 * 272.18903 * 11 10 9 14 14 C 1.54883 * 104.19762 * 264.30469 * 13 11 10 15 15 C 1.54959 * 102.77750 * 322.08585 * 14 13 11 16 16 C 1.53877 * 110.02943 * 155.00162 * 11 10 9 17 17 H 1.09004 * 110.03125 * 359.97438 * 16 11 10 18 18 C 1.53006 * 110.02774 * 238.61730 * 16 11 10 19 19 C 1.50700 * 109.46644 * 175.68961 * 18 16 11 20 20 C 1.34520 * 125.78639 * 90.00585 * 19 18 16 21 21 C 1.41381 * 106.83580 * 180.22245 * 20 19 18 22 22 C 1.34513 * 106.84363 * 359.57150 * 21 20 19 23 23 O 1.34302 * 125.79150 * 269.95626 * 19 18 16 24 24 H 0.97001 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47260 * 59.99929 * 9 7 2 26 26 H 1.08999 * 109.46676 * 300.00023 * 9 7 2 27 27 H 1.00903 * 111.00037 * 303.95148 * 10 9 7 28 28 H 1.09005 * 110.48608 * 22.98569 * 13 11 10 29 29 H 1.09004 * 110.48627 * 145.62298 * 13 11 10 30 30 H 1.09000 * 110.75852 * 80.37097 * 14 13 11 31 31 H 1.09002 * 110.75477 * 203.55937 * 14 13 11 32 32 H 1.09004 * 110.47736 * 279.23417 * 15 14 13 33 33 H 1.08995 * 110.53538 * 156.56823 * 15 14 13 34 34 H 1.09002 * 109.47199 * 55.68899 * 18 16 11 35 35 H 1.09001 * 109.47148 * 295.68996 * 18 16 11 36 36 H 1.08002 * 126.57789 * 359.95308 * 20 19 18 37 37 H 1.08009 * 126.57222 * 179.73218 * 21 20 19 38 38 H 1.07998 * 125.78715 * 180.12081 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0012 12 1 0.5772 -4.8283 -0.5670 13 6 1.2060 -5.3463 1.4470 14 6 2.3797 -6.2902 1.8080 15 6 2.6223 -7.0574 0.4837 16 6 2.4053 -5.9949 -0.6133 17 1 3.3614 -5.5645 -0.9112 18 6 1.7152 -6.6254 -1.8246 19 6 2.6485 -7.6126 -2.4769 20 6 2.7418 -8.9213 -2.1800 21 6 3.7393 -9.4624 -3.0233 22 6 4.1892 -8.4540 -3.7916 23 8 3.5275 -7.3352 -3.4537 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8400 -3.5483 -0.7836 28 1 1.1921 -4.4830 2.1123 29 1 0.2575 -5.8813 1.4949 30 1 3.2635 -5.7175 2.0893 31 1 2.0937 -6.9739 2.6073 32 1 1.9030 -7.8693 0.3761 33 1 3.6415 -7.4421 0.4459 34 1 1.4530 -5.8459 -2.5400 35 1 0.8107 -7.1401 -1.5003 36 1 2.1682 -9.4552 -1.4368 37 1 4.0739 -10.4890 -3.0478 38 1 4.9562 -8.5301 -4.5480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:48 Heat of formation + Delta-G solvation = -5.133231 kcal Electronic energy + Delta-G solvation = -17981.589328 eV Core-core repulsion = 15210.656725 eV Total energy + Delta-G solvation = -2770.932603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.56000 -38.58268 -34.20205 -33.11377 -32.32523 -31.90338 -28.43688 -27.63233 -25.83099 -24.18767 -21.89380 -21.63207 -20.59480 -19.81179 -19.19389 -17.29327 -16.47597 -15.97170 -15.48917 -14.87974 -14.62119 -14.32530 -13.90817 -13.39085 -13.17336 -12.84269 -12.72297 -12.39863 -12.34022 -11.91269 -11.41277 -11.21701 -10.96216 -10.71845 -10.62229 -10.54556 -10.46689 -10.32315 -10.20643 -9.92488 -9.78135 -9.11366 -8.46368 -8.41059 -7.23503 -6.01128 -4.02762 1.74630 2.60743 3.01801 3.33205 3.39182 3.43996 4.44657 4.62538 4.86420 4.89419 4.96737 5.02283 5.10235 5.34870 5.42494 5.49354 5.60249 5.65558 5.77541 5.83138 5.87725 5.94697 5.99394 6.09499 6.12683 6.22719 6.31086 6.41574 6.52186 6.59788 6.67837 6.78032 7.16374 7.31563 7.45500 7.82800 8.17495 8.44318 8.66634 9.07017 9.62198 11.09974 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.004606 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.032119 B = 6077.970087 C = 6673.907461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.088 3.912 12 H 0.038 0.962 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.089 4.089 17 H 0.080 0.920 18 C -0.038 4.038 19 C 0.007 3.993 20 C -0.217 4.217 21 C -0.215 4.215 22 C -0.051 4.051 23 O -0.175 6.175 24 H 0.261 0.739 25 H -0.015 1.015 26 H 0.028 0.972 27 H 0.328 0.672 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -18.177 -3.673 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.313 5.313 11 C -0.023 4.023 12 H 0.056 0.944 13 C -0.151 4.151 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.108 4.108 17 H 0.098 0.902 18 C -0.075 4.075 19 C -0.044 4.044 20 C -0.236 4.236 21 C -0.234 4.234 22 C -0.119 4.119 23 O -0.071 6.071 24 H 0.070 0.930 25 H 0.003 0.997 26 H 0.046 0.954 27 H 0.145 0.855 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.826 -17.743 -3.111 18.649 hybrid contribution 0.117 0.616 -0.966 1.151 sum 4.943 -17.127 -4.077 18.287 Atomic orbital electron populations 1.69966 1.06069 1.26719 1.51053 1.24984 0.94857 0.99319 0.95395 0.86505 0.79826 0.83109 0.78010 1.20758 1.21261 1.19778 1.21204 0.93508 0.90320 1.50149 0.92023 1.19586 0.90611 0.87394 0.95664 1.60771 1.20954 1.00866 1.48758 1.22116 0.94927 0.90041 0.95231 0.94361 1.22363 0.96647 0.99063 0.96983 1.22427 0.99349 0.97584 0.96143 1.22380 1.00827 0.96984 0.94773 1.22042 0.99451 0.95813 0.93499 0.90164 1.20400 0.94814 0.95969 0.96356 1.22588 0.94535 0.95706 0.91537 1.21542 1.03412 0.94094 1.04569 1.21801 1.01126 1.00454 0.99992 1.23967 1.00781 0.83784 1.03357 1.84050 1.42388 1.35759 1.44896 0.92963 0.99731 0.95388 0.85456 0.90568 0.92656 0.91188 0.92532 0.92019 0.92236 0.90010 0.88807 0.83729 0.83797 0.78456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.09 5.27 -4.98 -0.03 5.07 16 10 N -0.68 -14.55 6.25 -106.81 -0.67 -15.21 16 11 C 0.09 1.52 2.90 -66.59 -0.19 1.33 16 12 H 0.04 0.70 7.34 -51.93 -0.38 0.32 16 13 C -0.11 -1.81 6.50 -25.08 -0.16 -1.98 16 14 C -0.12 -1.62 6.91 -24.70 -0.17 -1.79 16 15 C -0.11 -1.42 5.57 -25.04 -0.14 -1.56 16 16 C -0.09 -1.27 2.60 -89.50 -0.23 -1.50 16 17 H 0.08 1.25 7.47 -51.93 -0.39 0.86 16 18 C -0.04 -0.49 4.88 -27.88 -0.14 -0.62 16 19 C 0.01 0.09 6.25 -35.62 -0.22 -0.14 16 20 C -0.22 -2.53 10.33 -39.70 -0.41 -2.94 16 21 C -0.21 -2.28 10.91 -39.70 -0.43 -2.71 16 22 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 23 O -0.17 -2.39 10.65 5.71 0.06 -2.32 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H -0.02 -0.42 8.07 -51.93 -0.42 -0.84 16 26 H 0.03 0.79 7.96 -51.93 -0.41 0.38 16 27 H 0.33 6.80 8.00 -39.29 -0.31 6.48 16 28 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.70 7.73 -51.93 -0.40 0.29 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.06 8.02 -51.93 -0.42 0.64 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -30.83 313.47 -8.43 -39.26 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.07 Total: 3.50 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.19 Total: -20.51 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.07 Total: -41.50 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: 0.06 Total: -2.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.83 -8.43 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.124 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds