Wall clock time and date at job start Mon Mar 30 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47050 * 270.00103 * 3 2 1 5 5 H 1.48499 * 109.47015 * 30.00281 * 3 2 1 6 6 H 1.48502 * 109.46628 * 150.00116 * 3 2 1 7 7 C 1.37876 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99833 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01477 * 33.60737 * 11 10 9 13 13 C 1.54263 * 110.07159 * 272.18903 * 11 10 9 14 14 C 1.54883 * 104.19762 * 264.30469 * 13 11 10 15 15 C 1.54959 * 102.77750 * 322.08585 * 14 13 11 16 16 C 1.53877 * 110.02943 * 155.00162 * 11 10 9 17 17 H 1.09004 * 110.03125 * 359.97438 * 16 11 10 18 18 C 1.53006 * 110.02774 * 238.61730 * 16 11 10 19 19 C 1.50700 * 109.46644 * 175.68961 * 18 16 11 20 20 C 1.34520 * 125.78639 * 90.00585 * 19 18 16 21 21 C 1.41381 * 106.83580 * 180.22245 * 20 19 18 22 22 C 1.34513 * 106.84363 * 359.57150 * 21 20 19 23 23 O 1.34302 * 125.79150 * 269.95626 * 19 18 16 24 24 H 0.97001 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47260 * 59.99929 * 9 7 2 26 26 H 1.08999 * 109.46676 * 300.00023 * 9 7 2 27 27 H 1.00903 * 111.00037 * 303.95148 * 10 9 7 28 28 H 1.09005 * 110.48608 * 22.98569 * 13 11 10 29 29 H 1.09004 * 110.48627 * 145.62298 * 13 11 10 30 30 H 1.09000 * 110.75852 * 80.37097 * 14 13 11 31 31 H 1.09002 * 110.75477 * 203.55937 * 14 13 11 32 32 H 1.09004 * 110.47736 * 279.23417 * 15 14 13 33 33 H 1.08995 * 110.53538 * 156.56823 * 15 14 13 34 34 H 1.09002 * 109.47199 * 55.68899 * 18 16 11 35 35 H 1.09001 * 109.47148 * 295.68996 * 18 16 11 36 36 H 1.08002 * 126.57789 * 359.95308 * 20 19 18 37 37 H 1.08009 * 126.57222 * 179.73218 * 21 20 19 38 38 H 1.07998 * 125.78715 * 180.12081 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0012 12 1 0.5772 -4.8283 -0.5670 13 6 1.2060 -5.3463 1.4470 14 6 2.3797 -6.2902 1.8080 15 6 2.6223 -7.0574 0.4837 16 6 2.4053 -5.9949 -0.6133 17 1 3.3614 -5.5645 -0.9112 18 6 1.7152 -6.6254 -1.8246 19 6 2.6485 -7.6126 -2.4769 20 6 2.7418 -8.9213 -2.1800 21 6 3.7393 -9.4624 -3.0233 22 6 4.1892 -8.4540 -3.7916 23 8 3.5275 -7.3352 -3.4537 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8400 -3.5483 -0.7836 28 1 1.1921 -4.4830 2.1123 29 1 0.2575 -5.8813 1.4949 30 1 3.2635 -5.7175 2.0893 31 1 2.0937 -6.9739 2.6073 32 1 1.9030 -7.8693 0.3761 33 1 3.6415 -7.4421 0.4459 34 1 1.4530 -5.8459 -2.5400 35 1 0.8107 -7.1401 -1.5003 36 1 2.1682 -9.4552 -1.4368 37 1 4.0739 -10.4890 -3.0478 38 1 4.9562 -8.5301 -4.5480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:48 Heat of formation + Delta-G solvation = -23.888894 kcal Electronic energy + Delta-G solvation = -17982.402634 eV Core-core repulsion = 15210.656725 eV Total energy + Delta-G solvation = -2771.745909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.44164 -39.88986 -36.02930 -34.31119 -33.79713 -33.22064 -29.66282 -29.13629 -27.40016 -25.54590 -23.68022 -22.63195 -21.56763 -20.94044 -20.58592 -18.56564 -18.15709 -16.99170 -16.90749 -16.63160 -16.05684 -15.36780 -15.31032 -14.84338 -14.55144 -14.36420 -13.70730 -13.67340 -13.47392 -13.24935 -13.14288 -12.76355 -12.74060 -12.30779 -12.15093 -11.90811 -11.81629 -11.61446 -11.55695 -11.38914 -11.18386 -10.76996 -10.66371 -9.29837 -9.06214 -8.22980 -6.34119 0.86908 1.39985 1.41770 1.53639 1.78120 2.18812 2.39540 3.10178 3.50620 3.62130 3.73905 3.95662 4.04789 4.21522 4.26518 4.41943 4.45508 4.56069 4.59586 4.69138 4.86663 4.93428 4.94915 5.02955 5.05329 5.10889 5.15018 5.22132 5.29898 5.31174 5.34048 5.40363 5.57336 5.64402 5.70550 6.05249 6.29996 6.48383 6.76342 6.90118 7.36987 8.88618 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.004606 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.032119 B = 6077.970087 C = 6673.907461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.212 3.788 10 N -0.681 5.681 11 C 0.081 3.919 12 H 0.026 0.974 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.101 4.101 16 C -0.079 4.079 17 H 0.064 0.936 18 C -0.032 4.032 19 C -0.022 4.022 20 C -0.212 4.212 21 C -0.223 4.223 22 C -0.055 4.055 23 O -0.202 6.202 24 H 0.265 0.735 25 H -0.043 1.043 26 H 0.000 1.000 27 H 0.330 0.670 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -19.748 -3.775 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.312 5.312 11 C -0.029 4.029 12 H 0.044 0.956 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.138 4.138 16 C -0.098 4.098 17 H 0.083 0.917 18 C -0.069 4.069 19 C -0.071 4.071 20 C -0.231 4.231 21 C -0.242 4.242 22 C -0.121 4.121 23 O -0.099 6.099 24 H 0.074 0.926 25 H -0.025 1.025 26 H 0.018 0.982 27 H 0.148 0.852 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.047 -19.341 -3.212 20.517 hybrid contribution -0.269 1.035 -0.962 1.439 sum 5.777 -18.306 -4.174 19.645 Atomic orbital electron populations 1.70093 1.07782 1.27974 1.51556 1.25945 0.95782 1.03337 0.94559 0.85342 0.78508 0.78022 0.78481 1.19689 1.20572 1.18954 1.21561 0.93733 0.91602 1.50590 0.91977 1.19196 0.90575 0.88887 0.92953 1.60682 1.20223 1.01406 1.48848 1.22284 0.94867 0.89144 0.96604 0.95560 1.22364 0.98958 0.98701 0.95147 1.22387 0.97452 0.97342 0.97656 1.22333 1.01991 0.96654 0.92835 1.21888 0.97858 0.95282 0.94739 0.91738 1.20285 0.95479 0.95850 0.95302 1.22566 0.95559 0.96285 0.92707 1.21855 1.03213 0.93516 1.04474 1.22179 1.00783 1.01678 0.99563 1.24745 1.00677 0.83026 1.03672 1.84030 1.43061 1.37352 1.45473 0.92614 1.02508 0.98155 0.85212 0.93834 0.90666 0.92724 0.89926 0.89705 0.91443 0.91644 0.87056 0.81993 0.81288 0.75291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.68 5.27 85.56 0.45 12.13 16 10 N -0.68 -30.24 6.25 -491.83 -3.07 -33.32 16 11 C 0.08 2.89 2.90 45.64 0.13 3.02 16 12 H 0.03 1.00 7.34 -2.39 -0.02 0.99 16 13 C -0.11 -3.67 6.50 31.67 0.21 -3.46 16 14 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 15 C -0.10 -2.32 5.57 31.69 0.18 -2.14 16 16 C -0.08 -2.21 2.60 -10.07 -0.03 -2.24 16 17 H 0.06 2.02 7.47 -2.39 -0.02 2.01 16 18 C -0.03 -0.80 4.88 29.85 0.15 -0.66 16 19 C -0.02 -0.53 6.25 24.83 0.16 -0.38 16 20 C -0.21 -4.39 10.33 22.19 0.23 -4.16 16 21 C -0.22 -4.10 10.91 22.19 0.24 -3.86 16 22 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 23 O -0.20 -5.34 10.65 -2.47 -0.03 -5.37 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.04 -2.54 8.07 -2.39 -0.02 -2.56 16 26 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 27 H 0.33 14.26 8.00 -89.69 -0.72 13.54 16 28 H 0.04 1.68 7.86 -2.38 -0.02 1.66 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.60 7.73 -2.38 -0.02 1.58 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 2.34 8.02 -2.39 -0.02 2.32 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.23 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -67.98 313.47 2.96 -65.02 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.31 Total: 18.94 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.44 Total: -35.30 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.79 Total: -90.43 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.03 Total: -5.37 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.98 2.96 -65.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.129 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds