Wall clock time and date at job start Mon Mar 30 2020 07:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99713 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01830 * 34.93865 * 11 10 9 13 13 C 1.54260 * 110.03350 * 273.54479 * 11 10 9 14 14 C 1.54899 * 104.19607 * 217.10719 * 13 11 10 15 15 C 1.54885 * 102.74766 * 37.94605 * 14 13 11 16 16 C 1.53877 * 110.02933 * 156.37866 * 11 10 9 17 17 H 1.09001 * 110.03614 * 238.57188 * 16 11 10 18 18 C 1.53001 * 110.03423 * 0.02562 * 16 11 10 19 19 C 1.50693 * 109.47259 * 184.99692 * 18 16 11 20 20 C 1.34514 * 125.78743 * 90.00163 * 19 18 16 21 21 C 1.41383 * 106.84083 * 179.97438 * 20 19 18 22 22 C 1.34513 * 106.84242 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.79316 * 269.69415 * 19 18 16 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.00902 * 111.00007 * 56.04449 * 10 9 7 28 28 H 1.09005 * 110.48839 * 335.78428 * 13 11 10 29 29 H 1.09001 * 110.48807 * 98.42946 * 13 11 10 30 30 H 1.08999 * 110.75249 * 156.25668 * 14 13 11 31 31 H 1.08992 * 110.75611 * 279.44139 * 14 13 11 32 32 H 1.08993 * 110.49094 * 80.73178 * 15 14 13 33 33 H 1.09003 * 110.48575 * 203.24751 * 15 14 13 34 34 H 1.08996 * 109.47256 * 305.00192 * 18 16 11 35 35 H 1.09004 * 109.47253 * 64.99969 * 18 16 11 36 36 H 1.08001 * 126.58287 * 359.96532 * 20 19 18 37 37 H 1.08003 * 126.57910 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.79221 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4697 -2.6183 -0.0001 12 1 5.8651 -1.7890 0.5864 13 6 6.0003 -2.5427 -1.4466 14 6 7.2309 -3.4833 -1.4495 15 6 6.7734 -4.6474 -0.5359 16 6 5.9612 -3.9565 0.5790 17 1 6.5958 -3.7772 1.4469 18 6 4.7666 -4.8275 0.9730 19 6 5.2599 -6.0802 1.6499 20 6 5.4692 -6.2307 2.9701 21 6 5.9266 -7.5544 3.1640 22 6 5.9701 -8.1334 1.9507 23 8 5.5596 -7.2376 1.0381 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 3.6259 -3.0952 -0.7817 28 1 5.2463 -2.8988 -2.1487 29 1 6.2989 -1.5232 -1.6907 30 1 7.4402 -3.8425 -2.4571 31 1 8.1027 -2.9801 -1.0316 32 1 6.1443 -5.3433 -1.0907 33 1 7.6363 -5.1653 -0.1170 34 1 4.1234 -4.2741 1.6571 35 1 4.2020 -5.0954 0.0799 36 1 5.3171 -5.4838 3.7352 37 1 6.1905 -8.0127 4.1057 38 1 6.2777 -9.1482 1.7458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:52 Heat of formation + Delta-G solvation = 1.946081 kcal Electronic energy + Delta-G solvation = -18188.873645 eV Core-core repulsion = 15418.248024 eV Total energy + Delta-G solvation = -2770.625621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.39127 -38.76846 -34.20760 -33.04785 -32.18602 -32.07331 -28.45764 -28.08211 -25.48619 -24.50198 -21.62855 -21.32755 -20.65081 -20.30407 -18.90260 -17.18011 -16.76782 -15.92126 -15.69909 -14.94352 -14.34630 -14.25574 -13.72358 -13.46501 -13.13646 -12.76880 -12.67643 -12.54804 -12.50409 -11.88680 -11.68025 -11.56281 -11.03495 -10.84615 -10.61615 -10.58035 -10.52167 -10.35267 -10.15246 -9.79005 -9.76404 -9.28267 -8.59509 -8.25813 -7.43567 -6.06306 -4.04156 1.90946 2.77233 3.19615 3.28227 3.35652 3.37522 4.41466 4.72121 4.76828 4.87253 5.01930 5.16559 5.24632 5.26665 5.32444 5.49621 5.69820 5.72730 5.75959 5.80657 5.86331 5.97354 6.01367 6.05766 6.13045 6.21394 6.29407 6.37140 6.48238 6.53736 6.61179 6.74141 6.79438 7.04712 7.34232 7.60782 7.90010 8.31702 8.64367 9.01966 9.55924 11.07011 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.005303 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.632053 B = 5278.594915 C = 5989.558845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.672 5.672 11 C 0.084 3.916 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.076 4.076 17 H 0.071 0.929 18 C -0.020 4.020 19 C 0.010 3.990 20 C -0.226 4.226 21 C -0.212 4.212 22 C -0.061 4.061 23 O -0.177 6.177 24 H 0.263 0.737 25 H -0.015 1.015 26 H 0.021 0.979 27 H 0.337 0.663 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.068 -11.705 1.310 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.213 1.213 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.302 5.302 11 C -0.028 4.028 12 H 0.093 0.907 13 C -0.192 4.192 14 C -0.160 4.160 15 C -0.156 4.156 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.058 4.058 19 C -0.040 4.040 20 C -0.245 4.245 21 C -0.231 4.231 22 C -0.128 4.128 23 O -0.073 6.073 24 H 0.073 0.927 25 H 0.003 0.997 26 H 0.039 0.961 27 H 0.155 0.845 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 14.801 -11.678 1.695 18.929 hybrid contribution 0.647 1.130 -0.552 1.414 sum 15.448 -10.548 1.143 18.740 Atomic orbital electron populations 1.69903 1.06177 1.26848 1.51031 1.24906 0.94715 0.98925 0.94758 0.86835 0.80249 0.83934 0.78550 1.20196 1.19278 1.21290 1.21070 0.89018 0.94755 1.50541 0.90301 1.20018 0.96510 0.85199 0.94723 1.60666 1.03788 1.16543 1.49190 1.22231 0.90271 0.96209 0.94046 0.90702 1.23151 0.97918 0.99413 0.98692 1.22418 0.97729 0.96597 0.99272 1.22454 0.99274 0.97275 0.96606 1.21810 0.95493 0.94516 0.97708 0.91095 1.20184 0.97272 0.86645 1.01667 1.23074 1.01678 0.87192 0.92091 1.21594 1.08800 0.97953 0.96120 1.21790 1.07159 0.95660 0.98522 1.23885 1.05881 0.95489 0.87561 1.84038 1.65045 1.20348 1.37905 0.92678 0.99750 0.96115 0.84474 0.91370 0.92060 0.92112 0.91886 0.91473 0.92356 0.86689 0.90209 0.83703 0.84019 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -14.43 9.87 -34.44 -0.34 -14.77 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.16 3.82 4.33 -4.98 -0.02 3.80 16 10 N -0.67 -12.88 4.35 -106.81 -0.46 -13.35 16 11 C 0.08 1.32 3.20 -66.60 -0.21 1.11 16 12 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 13 C -0.15 -2.17 6.39 -25.07 -0.16 -2.33 16 14 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 15 C -0.12 -1.47 5.93 -25.07 -0.15 -1.62 16 16 C -0.08 -1.04 2.92 -89.50 -0.26 -1.31 16 17 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 18 C -0.02 -0.29 4.11 -27.89 -0.11 -0.41 16 19 C 0.01 0.14 6.14 -35.63 -0.22 -0.08 16 20 C -0.23 -3.06 10.81 -39.70 -0.43 -3.49 16 21 C -0.21 -2.51 10.91 -39.70 -0.43 -2.95 16 22 C -0.06 -0.69 12.09 29.42 0.36 -0.33 16 23 O -0.18 -2.46 10.65 5.70 0.06 -2.40 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H -0.02 -0.36 7.16 -51.93 -0.37 -0.73 16 26 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 27 H 0.34 6.36 7.76 -39.29 -0.30 6.05 16 28 H 0.07 1.00 7.58 -51.93 -0.39 0.61 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.86 7.76 -51.93 -0.40 0.45 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 1.85 7.58 -51.93 -0.39 1.46 16 35 H 0.08 1.18 7.60 -51.93 -0.39 0.79 16 36 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -30.19 308.27 -7.94 -38.13 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.03 Total: 5.09 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.25 Total: -22.13 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.31 Total: -40.11 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: 0.06 Total: -2.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.19 -7.94 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.075 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds