Wall clock time and date at job start Mon Mar 30 2020 07:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99713 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01830 * 34.93865 * 11 10 9 13 13 C 1.54260 * 110.03350 * 273.54479 * 11 10 9 14 14 C 1.54899 * 104.19607 * 217.10719 * 13 11 10 15 15 C 1.54885 * 102.74766 * 37.94605 * 14 13 11 16 16 C 1.53877 * 110.02933 * 156.37866 * 11 10 9 17 17 H 1.09001 * 110.03614 * 238.57188 * 16 11 10 18 18 C 1.53001 * 110.03423 * 0.02562 * 16 11 10 19 19 C 1.50693 * 109.47259 * 184.99692 * 18 16 11 20 20 C 1.34514 * 125.78743 * 90.00163 * 19 18 16 21 21 C 1.41383 * 106.84083 * 179.97438 * 20 19 18 22 22 C 1.34513 * 106.84242 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.79316 * 269.69415 * 19 18 16 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.00902 * 111.00007 * 56.04449 * 10 9 7 28 28 H 1.09005 * 110.48839 * 335.78428 * 13 11 10 29 29 H 1.09001 * 110.48807 * 98.42946 * 13 11 10 30 30 H 1.08999 * 110.75249 * 156.25668 * 14 13 11 31 31 H 1.08992 * 110.75611 * 279.44139 * 14 13 11 32 32 H 1.08993 * 110.49094 * 80.73178 * 15 14 13 33 33 H 1.09003 * 110.48575 * 203.24751 * 15 14 13 34 34 H 1.08996 * 109.47256 * 305.00192 * 18 16 11 35 35 H 1.09004 * 109.47253 * 64.99969 * 18 16 11 36 36 H 1.08001 * 126.58287 * 359.96532 * 20 19 18 37 37 H 1.08003 * 126.57910 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.79221 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4697 -2.6183 -0.0001 12 1 5.8651 -1.7890 0.5864 13 6 6.0003 -2.5427 -1.4466 14 6 7.2309 -3.4833 -1.4495 15 6 6.7734 -4.6474 -0.5359 16 6 5.9612 -3.9565 0.5790 17 1 6.5958 -3.7772 1.4469 18 6 4.7666 -4.8275 0.9730 19 6 5.2599 -6.0802 1.6499 20 6 5.4692 -6.2307 2.9701 21 6 5.9266 -7.5544 3.1640 22 6 5.9701 -8.1334 1.9507 23 8 5.5596 -7.2376 1.0381 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 3.6259 -3.0952 -0.7817 28 1 5.2463 -2.8988 -2.1487 29 1 6.2989 -1.5232 -1.6907 30 1 7.4402 -3.8425 -2.4571 31 1 8.1027 -2.9801 -1.0316 32 1 6.1443 -5.3433 -1.0907 33 1 7.6363 -5.1653 -0.1170 34 1 4.1234 -4.2741 1.6571 35 1 4.2020 -5.0954 0.0799 36 1 5.3171 -5.4838 3.7352 37 1 6.1905 -8.0127 4.1057 38 1 6.2777 -9.1482 1.7458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:52 Heat of formation + Delta-G solvation = -15.868890 kcal Electronic energy + Delta-G solvation = -18189.646160 eV Core-core repulsion = 15418.248024 eV Total energy + Delta-G solvation = -2771.398136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.37939 -39.98549 -35.92436 -34.18405 -33.99727 -33.18365 -29.96479 -29.29669 -26.99207 -25.66602 -23.25766 -22.60567 -21.67595 -21.37387 -20.16324 -18.80124 -18.18837 -17.16962 -16.82153 -16.30081 -16.00446 -15.39952 -15.24345 -14.72370 -14.70203 -14.33830 -13.82637 -13.65024 -13.53833 -13.41653 -13.22421 -12.86358 -12.62372 -12.23967 -12.02185 -11.89837 -11.71348 -11.67126 -11.54877 -11.34320 -11.29885 -10.79320 -10.74675 -9.28389 -8.97359 -8.28407 -6.32094 0.93080 1.35795 1.36726 1.47645 1.80086 2.24198 2.34970 3.06274 3.46856 3.64653 3.77207 4.01848 4.11253 4.24147 4.30028 4.39091 4.55358 4.59264 4.63225 4.72819 4.75134 4.87317 4.93280 5.03373 5.06275 5.10316 5.12137 5.17118 5.26714 5.30635 5.38352 5.43105 5.52976 5.56794 5.72645 6.01756 6.34888 6.59674 6.70574 6.81044 7.33081 8.88402 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.005303 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.632053 B = 5278.594915 C = 5989.558845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.250 1.250 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.038 0.962 9 C 0.176 3.824 10 N -0.675 5.675 11 C 0.081 3.919 12 H 0.071 0.929 13 C -0.152 4.152 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.068 4.068 17 H 0.076 0.924 18 C -0.012 4.012 19 C -0.012 4.012 20 C -0.236 4.236 21 C -0.225 4.225 22 C -0.053 4.053 23 O -0.191 6.191 24 H 0.266 0.734 25 H -0.013 1.013 26 H 0.021 0.979 27 H 0.337 0.663 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.822 -12.070 1.285 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.174 1.174 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.047 3.953 10 N -0.305 5.305 11 C -0.030 4.030 12 H 0.089 0.911 13 C -0.191 4.191 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.087 4.087 17 H 0.095 0.905 18 C -0.050 4.050 19 C -0.062 4.062 20 C -0.255 4.255 21 C -0.243 4.243 22 C -0.120 4.120 23 O -0.087 6.087 24 H 0.075 0.925 25 H 0.004 0.996 26 H 0.040 0.960 27 H 0.155 0.845 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 17.579 -12.063 1.671 21.386 hybrid contribution -0.253 1.092 -0.500 1.227 sum 17.326 -10.971 1.171 20.541 Atomic orbital electron populations 1.70060 1.08201 1.28099 1.52632 1.25861 0.95563 1.03227 0.94300 0.85681 0.79334 0.78554 0.79126 1.19227 1.17378 1.20874 1.21367 0.91548 0.93331 1.49990 0.94386 1.19742 0.93416 0.87567 0.94559 1.60564 1.06360 1.14111 1.49457 1.22339 0.87797 0.97358 0.95498 0.91067 1.23093 0.98841 1.00117 0.97027 1.22385 0.96864 0.95614 1.00127 1.22380 0.99190 0.97293 0.95979 1.21739 0.95305 0.93308 0.98391 0.90543 1.19945 0.97229 0.87209 1.00599 1.22898 1.03418 0.87461 0.92376 1.21843 1.08560 0.99121 0.95966 1.22116 1.07348 0.94925 0.99950 1.24729 1.03892 0.96355 0.86978 1.84024 1.65428 1.20515 1.38779 0.92473 0.99557 0.96045 0.84518 0.92158 0.92071 0.90610 0.90558 0.91984 0.91283 0.89016 0.91247 0.83553 0.81671 0.74818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.01 0.45 5.47 84.66 0.46 0.92 16 3 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.52 -30.18 9.87 25.60 0.25 -29.93 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.18 8.23 4.33 85.55 0.37 8.60 16 10 N -0.68 -26.23 4.35 -491.83 -2.14 -28.37 16 11 C 0.08 2.47 3.20 45.64 0.15 2.62 16 12 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 13 C -0.15 -4.07 6.39 31.67 0.20 -3.87 16 14 C -0.11 -2.37 6.91 31.89 0.22 -2.15 16 15 C -0.11 -2.52 5.93 31.67 0.19 -2.33 16 16 C -0.07 -1.81 2.92 -10.07 -0.03 -1.84 16 17 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 18 C -0.01 -0.36 4.11 29.85 0.12 -0.24 16 19 C -0.01 -0.32 6.14 24.83 0.15 -0.17 16 20 C -0.24 -6.21 10.81 22.19 0.24 -5.97 16 21 C -0.22 -4.85 10.91 22.19 0.24 -4.60 16 22 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 23 O -0.19 -5.03 10.65 -2.50 -0.03 -5.06 16 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 25 H -0.01 -0.61 7.16 -2.38 -0.02 -0.63 16 26 H 0.02 1.01 7.50 -2.39 -0.02 0.99 16 27 H 0.34 13.08 7.76 -89.69 -0.70 12.38 16 28 H 0.06 1.72 7.58 -2.38 -0.02 1.70 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.49 7.76 -2.39 -0.02 1.47 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 3.09 7.58 -2.39 -0.02 3.08 16 35 H 0.07 2.13 7.60 -2.39 -0.02 2.11 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.24 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -66.11 308.27 3.68 -62.44 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.28 Total: 23.53 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.38 Total: -39.23 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -1.84 Total: -87.68 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.03 Total: -5.06 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -66.11 3.68 -62.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.566 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds