Wall clock time and date at job start Mon Mar 30 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00166 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99652 * 3 2 1 5 5 H 1.48495 * 109.47699 * 29.99720 * 3 2 1 6 6 H 1.48501 * 109.47229 * 149.99905 * 3 2 1 7 7 C 1.37877 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47183 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.46507 * 119.99810 * 269.99977 * 11 10 9 13 13 C 1.53006 * 109.46992 * 270.00306 * 12 11 10 14 14 C 1.52996 * 109.47196 * 179.97438 * 13 12 11 15 15 O 1.42900 * 109.47231 * 179.97438 * 14 13 12 16 16 C 1.39672 * 120.00547 * 90.00109 * 11 10 9 17 17 C 1.38918 * 120.07035 * 359.97438 * 16 11 10 18 18 C 1.38103 * 119.92232 * 180.26003 * 17 16 11 19 19 C 1.38291 * 120.07426 * 359.43747 * 18 17 16 20 20 C 1.38281 * 120.14889 * 0.56232 * 19 18 17 21 21 C 1.38103 * 120.07737 * 359.72142 * 20 19 18 22 22 H 0.97008 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46840 * 59.99608 * 9 7 2 24 24 H 1.09001 * 109.46732 * 300.00034 * 9 7 2 25 25 H 1.08998 * 109.47059 * 60.00237 * 10 9 7 26 26 H 1.08996 * 109.46929 * 299.99554 * 10 9 7 27 27 H 1.08997 * 109.46876 * 29.99909 * 12 11 10 28 28 H 1.08993 * 109.47226 * 150.00097 * 12 11 10 29 29 H 1.09004 * 109.46692 * 299.99781 * 13 12 11 30 30 H 1.09002 * 109.47051 * 59.99844 * 13 12 11 31 31 H 1.09001 * 109.46758 * 300.00189 * 14 13 12 32 32 H 1.09007 * 109.47094 * 59.99523 * 14 13 12 33 33 H 0.96701 * 113.99982 * 180.02562 * 15 14 13 34 34 H 1.08002 * 120.03585 * 359.97438 * 17 16 11 35 35 H 1.08004 * 119.95970 * 179.72372 * 18 17 16 36 36 H 1.07994 * 119.92283 * 180.28458 * 19 18 17 37 37 H 1.07998 * 119.96595 * 179.74375 * 20 19 18 38 38 H 1.08001 * 120.04036 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0023 11 7 5.4864 -2.6368 0.0035 12 6 6.2199 -2.6375 -1.2647 13 6 6.4751 -4.0803 -1.7055 14 6 7.2406 -4.0810 -3.0302 15 8 7.4795 -5.4285 -3.4415 16 6 6.1839 -2.6362 1.2136 17 6 5.4899 -2.6350 2.4170 18 6 6.1827 -2.6290 3.6117 19 6 7.5655 -2.6359 3.6110 20 6 8.2594 -2.6371 2.4148 21 6 7.5730 -2.6372 1.2165 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6806 -0.8889 25 1 3.6584 -3.1511 -0.8875 26 1 3.6577 -3.1499 0.8925 27 1 5.6314 -2.1240 -2.0251 28 1 7.1722 -2.1236 -1.1340 29 1 7.0637 -4.5937 -0.9451 30 1 5.5228 -4.5941 -1.8363 31 1 6.6517 -3.5676 -3.7903 32 1 8.1930 -3.5670 -2.8999 33 1 7.9622 -5.5053 -4.2760 34 1 4.4099 -2.6342 2.4182 35 1 5.6437 -2.6236 4.5476 36 1 8.1048 -2.6358 4.5466 37 1 9.3394 -2.6383 2.4177 38 1 8.1155 -2.6377 0.2826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085901717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:20 Heat of formation + Delta-G solvation = -29.351533 kcal Electronic energy + Delta-G solvation = -17975.228545 eV Core-core repulsion = 15203.245758 eV Total energy + Delta-G solvation = -2771.982787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38204 -37.32446 -36.21547 -33.41542 -32.19707 -30.80132 -30.24812 -28.41850 -25.79335 -24.08710 -22.19624 -21.63049 -21.07809 -19.67010 -17.65754 -17.29137 -16.79232 -15.66950 -15.38106 -14.99905 -14.43068 -14.22043 -13.99615 -13.50443 -13.36327 -13.06511 -12.66990 -12.61468 -12.49368 -12.14234 -11.65043 -11.29729 -11.05065 -11.03680 -10.94665 -10.65754 -10.42385 -10.09311 -9.95659 -9.84148 -9.35158 -9.27427 -8.60681 -8.56828 -6.85541 -6.09940 -4.09117 1.77857 1.96903 3.27211 3.35584 3.41322 3.45240 4.15693 4.30283 4.41285 4.86047 5.07733 5.17762 5.23637 5.25307 5.28487 5.33837 5.49039 5.54584 5.67106 5.78296 5.84842 5.91443 6.04896 6.14490 6.21649 6.34070 6.37972 6.58398 6.67594 6.80708 6.96134 7.13069 7.22126 7.30570 7.45886 7.61342 7.83825 7.97392 8.45049 8.93493 9.52452 11.03077 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.007013 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.275145 B = 3991.498740 C = 5373.353776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.026 4.026 10 C 0.132 3.868 11 N -0.623 5.623 12 C 0.127 3.873 13 C -0.140 4.140 14 C 0.078 3.922 15 O -0.575 6.575 16 C 0.227 3.773 17 C -0.192 4.192 18 C -0.074 4.074 19 C -0.193 4.193 20 C -0.078 4.078 21 C -0.209 4.209 22 H 0.264 0.736 23 H 0.020 0.980 24 H 0.011 0.989 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.377 0.623 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.975 -5.992 -1.418 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.065 4.065 10 C 0.011 3.989 11 N -0.330 5.330 12 C 0.002 3.998 13 C -0.179 4.179 14 C 0.000 4.000 15 O -0.380 6.380 16 C 0.124 3.876 17 C -0.215 4.215 18 C -0.092 4.092 19 C -0.213 4.213 20 C -0.097 4.097 21 C -0.231 4.231 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.029 0.971 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.223 0.777 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.359 -5.995 -1.040 17.454 hybrid contribution 0.590 1.156 -0.598 1.429 sum 16.949 -4.839 -1.637 17.702 Atomic orbital electron populations 1.69912 1.06276 1.26977 1.50773 1.24975 0.94678 0.99103 0.94358 0.86795 0.80499 0.83658 0.78476 1.20379 1.21310 1.18949 1.20999 0.89075 0.94609 1.51444 0.90882 1.19941 0.97012 0.92724 0.96798 1.21618 0.75981 0.99514 1.01812 1.46893 1.05981 1.78295 1.01864 1.21202 0.97222 0.94907 0.86434 1.22010 1.01316 0.98695 0.95865 1.22116 0.98417 0.83058 0.96416 1.86499 1.79902 1.27258 1.44348 1.17914 0.90998 0.92453 0.86258 1.20905 1.00557 1.08987 0.91026 1.20879 0.94093 0.97054 0.97217 1.20777 0.94282 1.08847 0.97426 1.20760 0.98812 0.97891 0.92199 1.20611 0.92284 1.11990 0.98257 0.92652 0.96144 0.97050 0.91484 0.91152 0.90403 0.91068 0.91056 0.90851 0.93428 0.93756 0.77662 0.85256 0.86579 0.87161 0.86963 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.03 -0.62 4.37 -27.88 -0.12 -0.74 16 10 C 0.13 2.57 5.10 -4.04 -0.02 2.55 16 11 N -0.62 -10.54 2.61 -171.75 -0.45 -10.99 16 12 C 0.13 1.75 5.16 -4.03 -0.02 1.73 16 13 C -0.14 -1.78 5.91 -26.73 -0.16 -1.94 16 14 C 0.08 0.81 7.05 37.16 0.26 1.07 16 15 O -0.58 -6.32 13.66 -35.23 -0.48 -6.80 16 16 C 0.23 3.84 6.55 -83.78 -0.55 3.29 16 17 C -0.19 -3.31 9.21 -39.38 -0.36 -3.67 16 18 C -0.07 -1.11 10.04 -39.61 -0.40 -1.50 16 19 C -0.19 -2.66 10.04 -39.55 -0.40 -3.06 16 20 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 21 C -0.21 -3.09 9.21 -39.38 -0.36 -3.45 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 25 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.07 1.38 6.20 -51.93 -0.32 1.05 16 27 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 28 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 2.25 9.12 45.56 0.42 2.66 16 34 H 0.13 2.35 6.14 -52.49 -0.32 2.03 16 35 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.51 6.14 -52.49 -0.32 1.18 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -32.00 313.99 -8.07 -40.07 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.02 Total: 2.70 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.96 Total: -20.14 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.33 Total: -37.72 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.48 Total: -6.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.00 -8.07 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085901717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.718 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds