Wall clock time and date at job start Mon Mar 30 2020 07:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00166 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99652 * 3 2 1 5 5 H 1.48495 * 109.47699 * 29.99720 * 3 2 1 6 6 H 1.48501 * 109.47229 * 149.99905 * 3 2 1 7 7 C 1.37877 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47183 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.46507 * 119.99810 * 269.99977 * 11 10 9 13 13 C 1.53006 * 109.46992 * 270.00306 * 12 11 10 14 14 C 1.52996 * 109.47196 * 179.97438 * 13 12 11 15 15 O 1.42900 * 109.47231 * 179.97438 * 14 13 12 16 16 C 1.39672 * 120.00547 * 90.00109 * 11 10 9 17 17 C 1.38918 * 120.07035 * 359.97438 * 16 11 10 18 18 C 1.38103 * 119.92232 * 180.26003 * 17 16 11 19 19 C 1.38291 * 120.07426 * 359.43747 * 18 17 16 20 20 C 1.38281 * 120.14889 * 0.56232 * 19 18 17 21 21 C 1.38103 * 120.07737 * 359.72142 * 20 19 18 22 22 H 0.97008 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46840 * 59.99608 * 9 7 2 24 24 H 1.09001 * 109.46732 * 300.00034 * 9 7 2 25 25 H 1.08998 * 109.47059 * 60.00237 * 10 9 7 26 26 H 1.08996 * 109.46929 * 299.99554 * 10 9 7 27 27 H 1.08997 * 109.46876 * 29.99909 * 12 11 10 28 28 H 1.08993 * 109.47226 * 150.00097 * 12 11 10 29 29 H 1.09004 * 109.46692 * 299.99781 * 13 12 11 30 30 H 1.09002 * 109.47051 * 59.99844 * 13 12 11 31 31 H 1.09001 * 109.46758 * 300.00189 * 14 13 12 32 32 H 1.09007 * 109.47094 * 59.99523 * 14 13 12 33 33 H 0.96701 * 113.99982 * 180.02562 * 15 14 13 34 34 H 1.08002 * 120.03585 * 359.97438 * 17 16 11 35 35 H 1.08004 * 119.95970 * 179.72372 * 18 17 16 36 36 H 1.07994 * 119.92283 * 180.28458 * 19 18 17 37 37 H 1.07998 * 119.96595 * 179.74375 * 20 19 18 38 38 H 1.08001 * 120.04036 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0023 11 7 5.4864 -2.6368 0.0035 12 6 6.2199 -2.6375 -1.2647 13 6 6.4751 -4.0803 -1.7055 14 6 7.2406 -4.0810 -3.0302 15 8 7.4795 -5.4285 -3.4415 16 6 6.1839 -2.6362 1.2136 17 6 5.4899 -2.6350 2.4170 18 6 6.1827 -2.6290 3.6117 19 6 7.5655 -2.6359 3.6110 20 6 8.2594 -2.6371 2.4148 21 6 7.5730 -2.6372 1.2165 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6806 -0.8889 25 1 3.6584 -3.1511 -0.8875 26 1 3.6577 -3.1499 0.8925 27 1 5.6314 -2.1240 -2.0251 28 1 7.1722 -2.1236 -1.1340 29 1 7.0637 -4.5937 -0.9451 30 1 5.5228 -4.5941 -1.8363 31 1 6.6517 -3.5676 -3.7903 32 1 8.1930 -3.5670 -2.8999 33 1 7.9622 -5.5053 -4.2760 34 1 4.4099 -2.6342 2.4182 35 1 5.6437 -2.6236 4.5476 36 1 8.1048 -2.6358 4.5466 37 1 9.3394 -2.6383 2.4177 38 1 8.1155 -2.6377 0.2826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085901717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:19 Heat of formation + Delta-G solvation = -50.098955 kcal Electronic energy + Delta-G solvation = -17976.128221 eV Core-core repulsion = 15203.245758 eV Total energy + Delta-G solvation = -2772.882463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58176 -38.24477 -37.37649 -35.30121 -33.61874 -32.26593 -31.52454 -29.73790 -27.26206 -25.43691 -23.46753 -22.86464 -22.45297 -21.01483 -19.11632 -18.64478 -18.12072 -16.75980 -16.49207 -16.36768 -16.19792 -15.42599 -15.19425 -14.92415 -14.67251 -14.44009 -14.22189 -14.00036 -13.65583 -13.46099 -13.22546 -12.88146 -12.38690 -12.24917 -12.08048 -12.00753 -11.97422 -11.74738 -11.55333 -11.35633 -10.87049 -10.81019 -10.64100 -9.73689 -8.33651 -8.11769 -6.37665 0.62575 0.81099 1.30287 1.33689 1.45507 2.22183 2.31810 3.02066 3.07998 3.42324 3.85944 4.01465 4.18150 4.25234 4.29218 4.36077 4.42891 4.46417 4.55993 4.61236 4.70928 4.71689 4.77394 4.85979 4.90826 5.08955 5.21185 5.23304 5.27499 5.36904 5.50907 5.58858 5.70249 5.82647 6.10969 6.19993 6.45329 6.69670 6.71913 6.92824 7.27510 8.82993 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.007013 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.275145 B = 3991.498740 C = 5373.353776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.014 4.014 10 C 0.147 3.853 11 N -0.629 5.629 12 C 0.126 3.874 13 C -0.132 4.132 14 C 0.081 3.919 15 O -0.598 6.598 16 C 0.204 3.796 17 C -0.223 4.223 18 C -0.083 4.083 19 C -0.190 4.190 20 C -0.076 4.076 21 C -0.208 4.208 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.016 0.984 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.440 -5.199 -1.594 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.053 4.053 10 C 0.024 3.976 11 N -0.338 5.338 12 C 0.003 3.997 13 C -0.171 4.171 14 C 0.003 3.997 15 O -0.407 6.407 16 C 0.102 3.898 17 C -0.245 4.245 18 C -0.101 4.101 19 C -0.210 4.210 20 C -0.094 4.094 21 C -0.231 4.231 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.865 -5.219 -1.230 20.576 hybrid contribution -0.471 0.805 -0.485 1.051 sum 19.394 -4.414 -1.714 19.964 Atomic orbital electron populations 1.70053 1.08103 1.28173 1.52362 1.25888 0.95500 1.03127 0.94050 0.85707 0.79197 0.78808 0.79216 1.18880 1.20792 1.18149 1.21319 0.91507 0.93374 1.50670 0.94371 1.19782 0.93964 0.95320 0.96224 1.21174 0.78311 0.96780 1.01330 1.46794 1.04669 1.79089 1.03228 1.21360 0.97685 0.95713 0.84975 1.21880 1.00407 0.97580 0.97216 1.22076 0.99310 0.83174 0.95110 1.86437 1.80548 1.27630 1.46037 1.18165 0.92120 0.93670 0.85864 1.20925 0.99697 1.11329 0.92573 1.21127 0.95177 0.96821 0.96994 1.21163 0.93676 1.07179 0.98997 1.21209 1.00608 0.96129 0.91457 1.20886 0.91243 1.11108 0.99840 0.92388 0.97133 0.96525 0.91502 0.92216 0.90566 0.88921 0.91979 0.93161 0.92543 0.91411 0.75177 0.87733 0.85245 0.84305 0.83512 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 7 C -0.53 -30.58 9.66 25.60 0.25 -30.33 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.68 4.37 29.85 0.13 -0.55 16 10 C 0.15 5.91 5.10 86.38 0.44 6.35 16 11 N -0.63 -21.13 2.61 -697.28 -1.82 -22.94 16 12 C 0.13 3.27 5.16 86.38 0.45 3.72 16 13 C -0.13 -3.21 5.91 30.60 0.18 -3.03 16 14 C 0.08 1.49 7.05 71.98 0.51 2.00 16 15 O -0.60 -11.95 13.66 -148.98 -2.04 -13.98 16 16 C 0.20 6.75 6.55 38.22 0.25 7.00 16 17 C -0.22 -7.76 9.21 22.40 0.21 -7.55 16 18 C -0.08 -2.40 10.04 22.25 0.22 -2.17 16 19 C -0.19 -4.66 10.04 22.29 0.22 -4.43 16 20 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 21 C -0.21 -5.61 9.21 22.40 0.21 -5.40 16 22 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 23 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 24 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 25 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 26 H 0.06 2.49 6.20 -2.39 -0.01 2.48 16 27 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.09 2.01 6.20 -2.39 -0.01 2.00 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.40 3.82 9.12 -74.06 -0.68 3.14 16 34 H 0.10 4.05 6.14 -2.91 -0.02 4.03 16 35 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.14 3.02 6.14 -2.91 -0.02 3.00 16 Total: -1.00 -70.27 313.99 2.39 -67.88 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.31 Total: 15.87 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.75 Total: -34.78 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.52 Total: -82.00 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -2.04 Total: -13.98 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -70.27 2.39 -67.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085901717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.779 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds