Wall clock time and date at job start Mon Mar 30 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99929 * 2 1 4 4 C 1.52998 * 109.47481 * 85.23905 * 3 2 1 5 5 C 1.50696 * 115.55018 * 185.43215 * 4 3 2 6 6 H 1.08004 * 120.00133 * 144.08523 * 5 4 3 7 7 C 1.37881 * 120.00217 * 324.08717 * 5 4 3 8 8 N 1.31514 * 119.99905 * 353.77753 * 7 5 4 9 9 Si 1.86796 * 119.99867 * 173.77631 * 7 5 4 10 10 H 1.48499 * 109.46954 * 90.00467 * 9 7 5 11 11 H 1.48505 * 109.46982 * 209.99663 * 9 7 5 12 12 H 1.48490 * 109.47513 * 330.00246 * 9 7 5 13 13 C 1.53004 * 117.49453 * 39.76493 * 4 3 2 14 14 C 1.52997 * 117.49793 * 331.10704 * 4 3 2 15 15 C 1.39819 * 119.99963 * 179.97438 * 2 1 3 16 16 C 1.38883 * 120.04763 * 184.46094 * 15 2 1 17 17 C 1.38119 * 119.94970 * 179.72129 * 16 15 2 18 18 C 1.38468 * 120.04593 * 0.52950 * 17 16 15 19 19 F 1.35104 * 119.94498 * 179.74493 * 18 17 16 20 20 C 1.38462 * 120.10060 * 359.76690 * 18 17 16 21 21 C 1.38121 * 120.04944 * 359.95369 * 20 18 17 22 22 H 1.08991 * 109.47173 * 96.15733 * 1 2 3 23 23 H 1.08995 * 109.46968 * 336.15334 * 1 2 3 24 24 H 1.09000 * 109.46925 * 216.15461 * 1 2 3 25 25 H 1.09002 * 109.47070 * 205.24551 * 3 2 1 26 26 H 1.09000 * 109.46805 * 325.24152 * 3 2 1 27 27 H 0.97000 * 120.00009 * 185.02269 * 8 7 5 28 28 H 1.08998 * 117.49959 * 359.97438 * 13 4 3 29 29 H 1.09001 * 117.49591 * 145.01901 * 13 4 3 30 30 H 1.09004 * 117.49588 * 214.97451 * 14 4 3 31 31 H 1.08994 * 117.50298 * 359.97438 * 14 4 3 32 32 H 1.08001 * 120.02324 * 359.97438 * 16 15 2 33 33 H 1.07995 * 119.97579 * 180.27239 * 17 16 15 34 34 H 1.08001 * 119.97097 * 179.97438 * 20 18 17 35 35 H 1.08003 * 120.02299 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3489 1.7704 1.4375 5 6 2.9726 3.1340 1.5878 6 1 2.6322 3.8007 2.3663 7 6 3.9778 3.5305 0.7314 8 7 4.4769 2.6776 -0.1364 9 14 4.6306 5.2792 0.8037 10 1 5.7617 5.3459 1.7637 11 1 5.1007 5.6882 -0.5442 12 1 3.5487 6.1935 1.2492 13 6 2.6512 0.7320 2.5198 14 6 1.2643 1.3750 2.4415 15 6 2.1641 -1.2109 0.0005 16 6 3.5498 -1.2138 0.0940 17 6 4.2380 -2.4114 0.1002 18 6 3.5481 -3.6079 0.0022 19 9 4.2237 -4.7779 0.0032 20 6 2.1671 -3.6071 -0.0973 21 6 1.4744 -2.4121 -0.0980 22 1 -0.3633 -0.1102 -1.0216 23 1 -0.3633 0.9399 0.4155 24 1 -0.3633 -0.8298 0.6063 25 1 3.1842 1.1187 -0.4383 26 1 1.6480 2.0055 -0.5859 27 1 5.2324 2.9335 -0.6884 28 1 2.7419 -0.3084 2.2078 29 1 3.3009 1.0354 3.3408 30 1 1.0021 2.1011 3.2111 31 1 0.4427 0.7579 2.0780 32 1 4.0886 -0.2805 0.1660 33 1 5.3152 -2.4143 0.1773 34 1 1.6311 -4.5416 -0.1741 35 1 0.3971 -2.4120 -0.1753 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:35 Heat of formation + Delta-G solvation = 19.455675 kcal Electronic energy + Delta-G solvation = -18345.011401 eV Core-core repulsion = 15451.684748 eV Total energy + Delta-G solvation = -2893.326653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.27739 -39.28221 -36.93824 -34.27471 -32.22874 -30.75759 -28.96751 -27.48458 -25.67919 -24.00614 -22.23679 -21.09301 -20.65356 -18.87217 -17.33371 -16.45643 -16.04348 -15.76787 -15.07062 -14.70746 -14.66922 -14.16385 -13.87426 -13.15816 -13.05413 -12.47572 -12.22693 -12.14933 -11.96455 -11.76725 -11.46597 -11.36908 -11.03717 -10.76068 -10.52677 -10.19272 -10.09950 -9.81048 -9.12690 -8.97720 -8.73431 -8.60620 -8.10258 -6.57959 -6.17228 -4.21300 1.75699 1.89805 3.20222 3.28383 3.31596 3.82437 4.21342 4.28028 4.89477 4.92190 5.20325 5.30636 5.51311 5.54525 5.72192 5.81137 5.92515 6.02743 6.13114 6.20027 6.32447 6.42652 6.47272 6.65526 6.70143 6.76668 6.84135 6.93527 7.04113 7.17271 7.33250 7.38056 7.47850 7.82738 7.94934 8.17857 8.37682 8.77268 9.39621 10.84773 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027462 B = 0.006721 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.333464 B = 4165.110794 C = 4694.511081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.621 5.621 3 C 0.150 3.850 4 C 0.037 3.963 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.889 5.889 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 C -0.201 4.201 14 C -0.216 4.216 15 C 0.225 3.775 16 C -0.158 4.158 17 C -0.105 4.105 18 C 0.011 3.989 19 F -0.157 7.157 20 C -0.109 4.109 21 C -0.191 4.191 22 H 0.039 0.961 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.130 0.870 26 H 0.056 0.944 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 -7.212 -1.506 8.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.328 5.328 3 C 0.029 3.971 4 C 0.035 3.965 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.527 5.527 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C -0.239 4.239 14 C -0.254 4.254 15 C 0.120 3.880 16 C -0.180 4.180 17 C -0.125 4.125 18 C -0.010 4.010 19 F -0.136 7.136 20 C -0.128 4.128 21 C -0.214 4.214 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.703 -7.000 -1.720 8.607 hybrid contribution 0.415 0.663 0.277 0.829 sum -4.289 -6.338 -1.443 7.787 Atomic orbital electron populations 1.21646 0.81337 1.02288 0.99955 1.47108 1.04357 1.04254 1.77115 1.21637 0.98314 0.80445 0.96667 1.19490 0.95348 0.93776 0.87841 1.20596 1.19016 0.97917 1.14804 0.92071 1.24981 0.96180 0.97662 0.94529 1.69660 1.24172 1.34775 1.24110 0.86456 0.79125 0.84274 0.77451 1.20582 1.20976 1.19815 1.22992 0.97593 0.98167 1.05115 1.23011 0.92374 1.04351 1.05630 1.17945 0.91455 0.86076 0.92560 1.21032 0.92656 0.99039 1.05287 1.20880 1.00137 0.90867 1.00610 1.17405 0.90155 0.81033 1.12377 1.91398 1.80542 1.46597 1.95096 1.20676 0.92176 0.98393 1.01604 1.20418 0.99456 0.90571 1.10960 0.94230 0.90832 0.92678 0.85257 0.92542 0.92450 0.90961 0.91161 0.91376 0.90858 0.82914 0.85516 0.85934 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 8.20 59.85 0.49 1.86 16 2 N -0.62 -11.46 2.24 -179.59 -0.40 -11.86 16 3 C 0.15 3.27 4.46 -4.04 -0.02 3.25 16 4 C 0.04 0.86 2.39 -155.66 -0.37 0.49 16 5 C -0.49 -12.55 9.05 -34.44 -0.31 -12.86 16 6 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 7 C 0.07 1.74 5.31 -17.82 -0.09 1.65 16 8 N -0.89 -22.75 10.60 55.43 0.59 -22.16 16 9 Si 0.90 19.98 29.55 -169.99 -5.02 14.96 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C -0.20 -4.50 9.45 -26.69 -0.25 -4.76 16 14 C -0.22 -4.58 9.33 -26.69 -0.25 -4.83 16 15 C 0.23 4.09 5.39 -83.74 -0.45 3.64 16 16 C -0.16 -2.99 7.66 -39.39 -0.30 -3.29 16 17 C -0.11 -1.82 10.02 -39.54 -0.40 -2.22 16 18 C 0.01 0.19 7.30 -39.41 -0.29 -0.09 16 19 F -0.16 -2.62 17.27 2.25 0.04 -2.58 16 20 C -0.11 -1.68 10.02 -39.54 -0.40 -2.07 16 21 C -0.19 -3.02 9.17 -39.39 -0.36 -3.39 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.12 6.84 -51.93 -0.36 0.76 16 24 H 0.05 0.74 6.77 -51.93 -0.35 0.39 16 25 H 0.13 3.07 3.92 -51.93 -0.20 2.86 16 26 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 27 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 28 H 0.07 1.58 5.27 -51.93 -0.27 1.31 16 29 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.41 4.98 -51.93 -0.26 1.15 16 32 H 0.15 3.26 6.16 -52.49 -0.32 2.94 16 33 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 1.68 6.42 -52.48 -0.34 1.34 16 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -25.64 283.84 -7.70 -33.35 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.18 Total: 6.63 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.00 Total: -22.61 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.19 Total: -34.02 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.64 -7.70 -33.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -25.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds