Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00154 * 2 1 4 4 C 1.53000 * 109.47111 * 71.37788 * 3 2 1 5 5 C 1.50701 * 115.54811 * 39.20350 * 4 3 2 6 6 H 1.07998 * 119.99769 * 267.65166 * 5 4 3 7 7 C 1.37880 * 120.00135 * 87.65354 * 5 4 3 8 8 N 1.31512 * 120.00026 * 182.48778 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 2.48251 * 7 5 4 10 10 H 1.48505 * 109.46792 * 88.76545 * 9 7 5 11 11 H 1.48497 * 109.47350 * 208.76310 * 9 7 5 12 12 H 1.48499 * 109.47561 * 328.76899 * 9 7 5 13 13 C 1.52997 * 117.49756 * 253.49301 * 4 3 2 14 14 C 1.52995 * 117.49587 * 184.86963 * 4 3 2 15 15 C 1.39853 * 110.99857 * 236.04707 * 2 1 3 16 16 C 1.38828 * 120.07778 * 64.50675 * 15 2 1 17 17 C 1.38155 * 119.94337 * 180.02562 * 16 15 2 18 18 C 1.38266 * 120.11657 * 0.02562 * 17 16 15 19 19 C 1.38294 * 120.15880 * 359.97438 * 18 17 16 20 20 C 1.38281 * 120.05054 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.05218 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47450 * 178.22665 * 1 2 3 23 23 H 1.09000 * 109.46897 * 298.22572 * 1 2 3 24 24 H 1.09009 * 109.46966 * 58.22092 * 1 2 3 25 25 H 1.09004 * 109.47011 * 191.38170 * 3 2 1 26 26 H 1.08998 * 109.47431 * 311.37321 * 3 2 1 27 27 H 0.96998 * 119.99758 * 180.02562 * 8 7 5 28 28 H 1.09001 * 117.50148 * 359.97438 * 13 4 3 29 29 H 1.09002 * 117.49598 * 145.02392 * 13 4 3 30 30 H 1.09002 * 117.49737 * 214.97795 * 14 4 3 31 31 H 1.08997 * 117.50556 * 359.97438 * 14 4 3 32 32 H 1.07994 * 120.02824 * 0.02562 * 16 15 2 33 33 H 1.07999 * 119.94075 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.91971 * 179.71893 * 18 17 16 35 35 H 1.08005 * 119.97307 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7482 2.0126 1.3670 5 6 1.9428 1.1059 2.5549 6 1 1.1043 0.5584 2.9594 7 6 3.1912 0.9753 3.1254 8 7 3.3713 0.1471 4.1309 9 14 4.6268 1.9748 2.4699 10 1 4.6849 3.2798 3.1763 11 1 5.8922 1.2319 2.6976 12 1 4.4445 2.2075 1.0146 13 6 0.6515 3.0753 1.4608 14 6 2.1234 3.4864 1.5341 15 6 1.9701 -0.7292 -1.0830 16 6 1.7367 -0.2960 -2.3812 17 6 2.2327 -1.0188 -3.4490 18 6 2.9606 -2.1732 -3.2272 19 6 3.1958 -2.6089 -1.9359 20 6 2.7026 -1.8906 -0.8621 21 9 2.9327 -2.3159 0.3994 22 1 -0.3634 -1.0271 -0.0318 23 1 -0.3633 0.4860 0.9055 24 1 -0.3633 0.5413 -0.8737 25 1 3.0662 1.3495 -0.2028 26 1 1.4916 1.9541 -0.7711 27 1 4.2496 0.0556 4.5325 28 1 0.1064 3.3179 0.5486 29 1 0.0703 3.1187 2.3819 30 1 2.5106 3.8003 2.5035 31 1 2.5468 3.9991 0.6705 32 1 1.1680 0.6052 -2.5561 33 1 2.0507 -0.6820 -4.4589 34 1 3.3429 -2.7382 -4.0644 35 1 3.7651 -3.5108 -1.7660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 26.026549 kcal Electronic energy + Delta-G solvation = -18582.078109 eV Core-core repulsion = 15689.036391 eV Total energy + Delta-G solvation = -2893.041718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.16644 -39.39700 -37.36159 -35.19456 -31.87302 -30.37259 -29.44128 -27.12779 -25.41601 -24.20209 -22.36131 -21.60446 -20.94965 -18.80307 -17.31327 -16.35603 -15.97147 -15.92003 -15.13013 -14.76799 -14.44527 -14.02712 -13.87330 -13.64874 -13.23528 -12.67862 -12.52310 -12.22682 -11.98439 -11.78354 -11.72718 -11.40649 -11.04791 -10.85199 -10.39383 -10.38295 -10.05108 -9.48841 -8.99764 -8.77631 -8.40991 -8.37998 -8.25226 -7.73194 -5.90008 -3.87793 1.33665 1.40621 3.38920 3.48529 3.50736 3.75428 4.24608 4.58312 4.68823 4.94536 4.97628 5.02671 5.33392 5.36786 5.47031 5.67800 5.77463 5.86557 5.96747 5.98231 6.16800 6.17253 6.22056 6.31186 6.42492 6.47499 6.48843 6.51559 6.62524 6.73870 7.00060 7.09116 7.14632 7.59345 7.93390 7.98007 8.69624 9.13379 9.74080 11.23120 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.009071 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.547938 B = 3085.945747 C = 3566.787925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.474 5.474 3 C 0.100 3.900 4 C 0.009 3.991 5 C -0.452 4.452 6 H 0.077 0.923 7 C 0.079 3.921 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.264 1.264 13 C -0.185 4.185 14 C -0.204 4.204 15 C 0.067 3.933 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.104 4.104 19 C -0.159 4.159 20 C 0.128 3.872 21 F -0.116 7.116 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.015 0.985 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -1.425 -14.711 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.194 5.194 3 C -0.026 4.026 4 C 0.008 3.992 5 C -0.490 4.490 6 H 0.095 0.905 7 C -0.122 4.122 8 N -0.539 5.539 9 Si 0.706 3.294 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.189 1.189 13 C -0.222 4.222 14 C -0.241 4.241 15 C -0.028 4.028 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.179 4.179 20 C 0.107 3.893 21 F -0.094 7.094 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.315 -1.736 -14.058 14.352 hybrid contribution 0.739 0.905 -0.807 1.420 sum -1.576 -0.831 -14.864 14.971 Atomic orbital electron populations 1.22327 0.85989 1.01012 1.01029 1.59292 1.07820 1.14850 1.37395 1.21927 0.98619 0.85660 0.96389 1.19432 0.98048 0.87221 0.94509 1.19991 0.95977 1.24047 1.08952 0.90502 1.24855 0.98040 0.94832 0.94501 1.69881 1.23054 1.36581 1.24354 0.86936 0.82295 0.79885 0.80237 1.20928 1.22492 1.18890 1.22907 0.91028 1.07459 1.00826 1.22970 0.98540 1.01394 1.01227 1.19167 0.98726 0.94610 0.90300 1.21669 1.00359 1.00294 0.92526 1.20993 0.99444 0.95866 0.98664 1.20900 0.98745 0.96634 0.95909 1.21128 1.03223 1.01482 0.92020 1.17774 0.97876 0.93731 0.79909 1.91597 1.92094 1.88781 1.36924 0.92395 0.89662 0.96629 0.91618 0.96622 0.92970 0.91395 0.89534 0.89325 0.91245 0.85756 0.85992 0.85541 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.11 60.06 0.55 1.31 16 2 N -0.47 -9.79 3.84 -178.87 -0.69 -10.48 16 3 C 0.10 2.11 4.42 -3.83 -0.02 2.09 16 4 C 0.01 0.21 0.35 -155.66 -0.05 0.16 16 5 C -0.45 -12.61 8.75 -34.44 -0.30 -12.91 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 8 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 9 Si 0.88 22.56 24.91 -169.99 -4.23 18.33 16 10 H -0.28 -7.09 7.10 56.52 0.40 -6.69 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 12 H -0.26 -6.46 5.54 56.52 0.31 -6.14 16 13 C -0.18 -3.70 9.67 -26.73 -0.26 -3.95 16 14 C -0.20 -4.35 7.46 -26.73 -0.20 -4.55 16 15 C 0.07 1.23 4.62 -83.67 -0.39 0.85 16 16 C -0.13 -1.89 8.75 -39.39 -0.34 -2.24 16 17 C -0.13 -1.60 10.04 -39.60 -0.40 -2.00 16 18 C -0.10 -1.24 10.04 -39.55 -0.40 -1.64 16 19 C -0.16 -2.28 10.02 -39.55 -0.40 -2.68 16 20 C 0.13 2.36 7.31 -39.26 -0.29 2.07 16 21 F -0.12 -2.55 17.08 2.25 0.04 -2.52 16 22 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 23 H 0.08 1.63 7.34 -51.93 -0.38 1.25 16 24 H 0.02 0.24 7.51 -51.92 -0.39 -0.15 16 25 H 0.07 1.48 6.53 -51.93 -0.34 1.15 16 26 H 0.02 0.29 7.36 -51.93 -0.38 -0.09 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.07 1.18 8.08 -51.93 -0.42 0.77 16 29 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.09 2.00 6.96 -51.93 -0.36 1.64 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.12 1.68 7.30 -52.49 -0.38 1.30 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -31.45 291.54 -7.14 -38.59 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.84 Total: 0.35 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.59 Total: -21.27 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.09 Total: -37.88 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.23 Total: 18.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.45 -7.14 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.618 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds