Wall clock time and date at job start Mon Mar 30 2020 07:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00154 * 2 1 4 4 C 1.53000 * 109.47111 * 71.37788 * 3 2 1 5 5 C 1.50701 * 115.54811 * 39.20350 * 4 3 2 6 6 H 1.07998 * 119.99769 * 267.65166 * 5 4 3 7 7 C 1.37880 * 120.00135 * 87.65354 * 5 4 3 8 8 N 1.31512 * 120.00026 * 182.48778 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 2.48251 * 7 5 4 10 10 H 1.48505 * 109.46792 * 88.76545 * 9 7 5 11 11 H 1.48497 * 109.47350 * 208.76310 * 9 7 5 12 12 H 1.48499 * 109.47561 * 328.76899 * 9 7 5 13 13 C 1.52997 * 117.49756 * 253.49301 * 4 3 2 14 14 C 1.52995 * 117.49587 * 184.86963 * 4 3 2 15 15 C 1.39853 * 110.99857 * 236.04707 * 2 1 3 16 16 C 1.38828 * 120.07778 * 64.50675 * 15 2 1 17 17 C 1.38155 * 119.94337 * 180.02562 * 16 15 2 18 18 C 1.38266 * 120.11657 * 0.02562 * 17 16 15 19 19 C 1.38294 * 120.15880 * 359.97438 * 18 17 16 20 20 C 1.38281 * 120.05054 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.05218 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47450 * 178.22665 * 1 2 3 23 23 H 1.09000 * 109.46897 * 298.22572 * 1 2 3 24 24 H 1.09009 * 109.46966 * 58.22092 * 1 2 3 25 25 H 1.09004 * 109.47011 * 191.38170 * 3 2 1 26 26 H 1.08998 * 109.47431 * 311.37321 * 3 2 1 27 27 H 0.96998 * 119.99758 * 180.02562 * 8 7 5 28 28 H 1.09001 * 117.50148 * 359.97438 * 13 4 3 29 29 H 1.09002 * 117.49598 * 145.02392 * 13 4 3 30 30 H 1.09002 * 117.49737 * 214.97795 * 14 4 3 31 31 H 1.08997 * 117.50556 * 359.97438 * 14 4 3 32 32 H 1.07994 * 120.02824 * 0.02562 * 16 15 2 33 33 H 1.07999 * 119.94075 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.91971 * 179.71893 * 18 17 16 35 35 H 1.08005 * 119.97307 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7482 2.0126 1.3670 5 6 1.9428 1.1059 2.5549 6 1 1.1043 0.5584 2.9594 7 6 3.1912 0.9753 3.1254 8 7 3.3713 0.1471 4.1309 9 14 4.6268 1.9748 2.4699 10 1 4.6849 3.2798 3.1763 11 1 5.8922 1.2319 2.6976 12 1 4.4445 2.2075 1.0146 13 6 0.6515 3.0753 1.4608 14 6 2.1234 3.4864 1.5341 15 6 1.9701 -0.7292 -1.0830 16 6 1.7367 -0.2960 -2.3812 17 6 2.2327 -1.0188 -3.4490 18 6 2.9606 -2.1732 -3.2272 19 6 3.1958 -2.6089 -1.9359 20 6 2.7026 -1.8906 -0.8621 21 9 2.9327 -2.3159 0.3994 22 1 -0.3634 -1.0271 -0.0318 23 1 -0.3633 0.4860 0.9055 24 1 -0.3633 0.5413 -0.8737 25 1 3.0662 1.3495 -0.2028 26 1 1.4916 1.9541 -0.7711 27 1 4.2496 0.0556 4.5325 28 1 0.1064 3.3179 0.5486 29 1 0.0703 3.1187 2.3819 30 1 2.5106 3.8003 2.5035 31 1 2.5468 3.9991 0.6705 32 1 1.1680 0.6052 -2.5561 33 1 2.0507 -0.6820 -4.4589 34 1 3.3429 -2.7382 -4.0644 35 1 3.7651 -3.5108 -1.7660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:38 Heat of formation + Delta-G solvation = 6.285711 kcal Electronic energy + Delta-G solvation = -18582.934136 eV Core-core repulsion = 15689.036391 eV Total energy + Delta-G solvation = -2893.897745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.64585 -40.67733 -38.88215 -36.64042 -34.08557 -31.46757 -30.64907 -28.70636 -27.45878 -25.58843 -23.54325 -23.25831 -22.20880 -20.69551 -18.55926 -18.22965 -17.31911 -17.23049 -16.90372 -16.44913 -15.68542 -15.60021 -15.28703 -14.97071 -14.77975 -14.71708 -13.99615 -13.80596 -13.43610 -13.10272 -12.97134 -12.93386 -12.72460 -12.34925 -12.13108 -12.04761 -11.84651 -11.46946 -10.90728 -10.51521 -10.19626 -9.86649 -9.49491 -9.13528 -8.16215 -6.15940 0.23788 0.27628 1.32863 1.36589 1.46545 2.43168 2.66647 2.86953 3.20814 3.29789 3.50467 3.89853 4.09227 4.17328 4.26793 4.33873 4.40039 4.42239 4.43546 4.52361 4.65084 4.74591 4.86507 4.88863 5.06625 5.10004 5.15645 5.26243 5.34789 5.43002 5.45963 5.51883 5.79016 5.89786 6.18999 6.45695 6.61930 6.88018 7.48897 9.01210 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.009071 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.547938 B = 3085.945747 C = 3566.787925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.512 5.512 3 C 0.113 3.887 4 C -0.023 4.023 5 C -0.436 4.436 6 H 0.027 0.973 7 C 0.015 3.985 8 N -0.957 5.957 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.310 1.310 12 H -0.239 1.239 13 C -0.160 4.160 14 C -0.200 4.200 15 C 0.041 3.959 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.157 4.157 20 C 0.075 3.925 21 F -0.155 7.155 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.257 0.743 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 0.161 -19.308 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.232 5.232 3 C -0.013 4.013 4 C -0.024 4.024 5 C -0.474 4.474 6 H 0.045 0.955 7 C -0.180 4.180 8 N -0.599 5.599 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.238 1.238 12 H -0.163 1.163 13 C -0.197 4.197 14 C -0.238 4.238 15 C -0.054 4.054 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.176 4.176 20 C 0.055 3.945 21 F -0.134 7.134 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.188 0.812 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.416 -0.128 -18.686 18.842 hybrid contribution 0.644 0.323 0.545 0.903 sum -1.772 0.195 -18.141 18.228 Atomic orbital electron populations 1.22230 0.85035 1.01177 1.01195 1.59054 1.09081 1.14943 1.40136 1.21694 0.97806 0.86413 0.95435 1.19367 1.01762 0.87473 0.93788 1.20128 0.94052 1.23231 1.09992 0.95469 1.25679 1.01121 0.96238 0.94965 1.70057 1.23473 1.39538 1.26831 0.85989 0.78216 0.78524 0.81115 1.19522 1.23782 1.16253 1.22924 0.90502 1.04114 1.02154 1.23012 0.99622 0.99458 1.01670 1.19284 1.00134 0.94854 0.91161 1.21825 1.00558 1.01104 0.91408 1.21502 0.97120 0.94803 0.99819 1.21426 0.97143 0.96476 0.95737 1.21417 1.02573 1.01523 0.92078 1.18425 1.00846 0.95749 0.79486 1.91489 1.92834 1.89407 1.39634 0.92560 0.91953 0.93431 0.93624 0.93208 0.93407 0.87536 0.90577 0.91046 0.88097 0.84139 0.81762 0.81222 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.76 9.11 127.69 1.16 2.92 16 2 N -0.51 -21.15 3.84 -719.82 -2.76 -23.91 16 3 C 0.11 4.55 4.42 86.30 0.38 4.93 16 4 C -0.02 -1.02 0.35 -52.93 -0.02 -1.04 16 5 C -0.44 -25.35 8.75 25.60 0.22 -25.12 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 7 C 0.02 0.92 5.47 84.66 0.46 1.39 16 8 N -0.96 -63.58 13.96 21.45 0.30 -63.28 16 9 Si 0.93 47.45 24.91 68.60 1.71 49.16 16 10 H -0.27 -12.97 7.10 99.48 0.71 -12.26 16 11 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 12 H -0.24 -11.06 5.54 99.48 0.55 -10.51 16 13 C -0.16 -6.00 9.67 30.59 0.30 -5.70 16 14 C -0.20 -8.01 7.46 30.59 0.23 -7.78 16 15 C 0.04 1.45 4.62 38.20 0.18 1.63 16 16 C -0.13 -3.34 8.75 22.39 0.20 -3.14 16 17 C -0.11 -2.18 10.04 22.26 0.22 -1.95 16 18 C -0.09 -1.73 10.04 22.29 0.22 -1.51 16 19 C -0.16 -4.23 10.02 22.29 0.22 -4.01 16 20 C 0.08 2.82 7.31 22.48 0.16 2.98 16 21 F -0.15 -7.34 17.08 44.97 0.77 -6.57 16 22 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 23 H 0.06 2.43 7.34 -2.39 -0.02 2.41 16 24 H 0.05 1.33 7.51 -2.38 -0.02 1.32 16 25 H 0.05 1.99 6.53 -2.38 -0.02 1.97 16 26 H 0.05 1.64 7.36 -2.39 -0.02 1.62 16 27 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 28 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.07 3.11 6.96 -2.39 -0.02 3.09 16 31 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.14 3.11 7.30 -2.91 -0.02 3.09 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -74.87 291.54 4.87 -70.00 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.92 Total: 11.02 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.94 Total: -36.41 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.46 Total: -87.19 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.77 Total: -6.57 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.71 Total: 49.16 kcal Total: -74.87 4.87 -70.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.285 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds