Wall clock time and date at job start Mon Mar 30 2020 07:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48504 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46961 * 300.00139 * 3 2 1 6 6 H 1.48497 * 109.47315 * 59.99764 * 3 2 1 7 7 C 1.37874 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99588 * 359.72900 * 7 2 1 10 10 C 1.53002 * 109.47059 * 180.27280 * 9 7 2 11 11 C 1.53000 * 109.46921 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46698 * 185.44217 * 11 10 9 13 13 C 1.47896 * 111.00216 * 65.23897 * 12 11 10 14 14 C 1.53993 * 107.06114 * 214.15516 * 13 12 11 15 15 C 1.54604 * 105.13511 * 1.22339 * 14 13 12 16 16 C 1.48529 * 111.00029 * 307.84026 * 12 11 10 17 17 H 1.08997 * 110.66993 * 41.29053 * 16 12 11 18 18 C 1.50702 * 110.66992 * 278.15897 * 16 12 11 19 19 C 1.34515 * 125.79275 * 139.99959 * 18 16 12 20 20 C 1.41379 * 106.83929 * 180.02562 * 19 18 16 21 21 C 1.34517 * 106.84518 * 359.97438 * 20 19 18 22 22 O 1.34306 * 108.41813 * 359.73983 * 21 20 19 23 23 H 0.97000 * 120.00098 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46976 * 300.27019 * 9 7 2 25 25 H 1.08995 * 109.47503 * 60.26992 * 9 7 2 26 26 H 1.08994 * 109.47075 * 300.00041 * 10 9 7 27 27 H 1.09003 * 109.46961 * 59.99748 * 10 9 7 28 28 H 1.08996 * 109.47492 * 305.43598 * 11 10 9 29 29 H 1.09001 * 109.47331 * 65.44618 * 11 10 9 30 30 H 1.09001 * 109.91996 * 333.50775 * 13 12 11 31 31 H 1.08999 * 109.91643 * 94.80055 * 13 12 11 32 32 H 1.08998 * 110.30802 * 120.13828 * 14 13 12 33 33 H 1.09001 * 110.30852 * 242.31184 * 14 13 12 34 34 H 1.09004 * 110.72210 * 140.31867 * 15 14 13 35 35 H 1.08998 * 110.72257 * 263.42212 * 15 14 13 36 36 H 1.07995 * 126.57510 * 0.03687 * 19 18 16 37 37 H 1.08004 * 126.57786 * 180.02562 * 20 19 18 38 38 H 1.07993 * 125.79185 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0073 10 6 2.2454 -3.6620 0.0134 11 6 1.4804 -4.9870 0.0209 12 7 2.4298 -6.0997 0.1580 13 6 3.1085 -6.0585 1.4714 14 6 4.5423 -6.5772 1.2555 15 6 4.6380 -6.8811 -0.2574 16 6 3.5088 -6.0071 -0.8585 17 1 3.8410 -4.9755 -0.9741 18 6 3.0462 -6.5695 -2.1779 19 6 3.3182 -6.0555 -3.3909 20 6 2.6912 -6.8940 -4.3410 21 6 2.0741 -7.8706 -3.6519 22 8 2.2976 -7.6724 -2.3424 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5522 0.8976 25 1 0.6245 -2.5615 -0.8823 26 1 2.8721 -3.6088 -0.8768 27 1 2.8721 -3.5996 0.9031 28 1 0.7830 -4.9992 0.8584 29 1 0.9286 -5.0933 -0.9131 30 1 3.1363 -5.0342 1.8431 31 1 2.5846 -6.6995 2.1804 32 1 5.2672 -5.8125 1.5344 33 1 4.7073 -7.4855 1.8350 34 1 5.6093 -6.5804 -0.6505 35 1 4.4558 -7.9382 -0.4507 36 1 3.9034 -5.1720 -3.5989 37 1 2.7058 -6.7740 -5.4142 38 1 1.5004 -8.6796 -4.0793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116287683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:58 Heat of formation + Delta-G solvation = 9.981516 kcal Electronic energy + Delta-G solvation = -18329.354498 eV Core-core repulsion = 15559.077319 eV Total energy + Delta-G solvation = -2770.277178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35325 -39.07844 -34.27929 -32.81553 -32.44516 -30.91771 -29.99180 -27.23889 -26.01619 -23.42335 -21.92150 -21.44597 -20.84966 -20.56546 -19.17722 -17.07333 -16.44693 -15.79818 -15.70848 -15.21836 -14.52909 -14.32989 -14.10315 -13.38104 -13.13621 -12.60790 -12.56952 -12.46126 -12.19008 -11.89660 -11.55477 -11.43513 -11.16476 -11.02821 -10.86063 -10.66556 -10.56917 -10.53060 -9.71420 -9.59852 -9.47207 -9.18293 -8.36081 -8.26408 -7.99871 -6.00667 -4.03502 1.92537 2.78452 3.20896 3.29596 3.37104 3.40814 4.16839 4.44786 4.71266 4.74025 5.00071 5.08264 5.21625 5.25465 5.34796 5.42061 5.55863 5.68520 5.79849 5.84338 5.89641 5.94118 6.02160 6.06902 6.14035 6.20599 6.27021 6.28833 6.53622 6.65290 6.75851 7.03679 7.10757 7.30241 7.46281 7.65681 7.79827 7.98599 8.41233 9.03539 9.60720 11.10465 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.005500 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.386295 B = 5089.376141 C = 5686.870181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.146 4.146 11 C 0.043 3.957 12 N -0.511 5.511 13 C 0.028 3.972 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.129 3.871 17 H 0.099 0.901 18 C 0.023 3.977 19 C -0.216 4.216 20 C -0.213 4.213 21 C -0.054 4.054 22 O -0.159 6.159 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 -15.561 -2.995 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.184 4.184 11 C -0.085 4.085 12 N -0.234 5.234 13 C -0.100 4.100 14 C -0.167 4.167 15 C -0.153 4.153 16 C 0.021 3.979 17 H 0.117 0.883 18 C -0.028 4.028 19 C -0.236 4.236 20 C -0.232 4.232 21 C -0.122 4.122 22 O -0.054 6.054 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.092 -16.117 -2.794 17.828 hybrid contribution 0.744 1.928 -0.278 2.085 sum 7.836 -14.189 -3.072 16.497 Atomic orbital electron populations 1.69975 1.06046 1.26479 1.50912 1.25025 0.94834 0.99236 0.95345 0.86564 0.80091 0.83901 0.77618 1.19790 1.20984 1.20985 1.21276 0.92935 0.91129 1.50477 0.92828 1.19016 0.93826 0.91134 0.97261 1.22259 1.00132 0.95867 1.00166 1.22436 0.95066 0.88508 1.02485 1.64956 1.13365 1.43521 1.01530 1.22912 0.93546 1.01205 0.92304 1.22398 0.96917 1.01356 0.96050 1.22524 0.97380 1.00318 0.95075 1.21440 0.91451 0.98527 0.86469 0.88339 1.22139 0.96783 0.87860 0.96040 1.21584 1.07065 1.03281 0.91694 1.21757 1.03469 0.97492 1.00507 1.23979 1.04863 1.02618 0.80726 1.84076 1.55578 1.39181 1.26591 0.93044 0.96578 0.96555 0.93130 0.93009 0.90724 0.91073 0.92148 0.90465 0.91253 0.91042 0.90808 0.90672 0.83661 0.83820 0.78568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.15 -3.00 4.30 -26.73 -0.11 -3.11 16 11 C 0.04 0.78 5.32 -3.82 -0.02 0.76 16 12 N -0.51 -8.11 5.22 -224.00 -1.17 -9.28 16 13 C 0.03 0.39 6.46 -2.76 -0.02 0.37 16 14 C -0.13 -1.47 6.93 -25.37 -0.18 -1.65 16 15 C -0.11 -1.39 6.48 -24.87 -0.16 -1.55 16 16 C 0.13 1.92 2.53 -66.94 -0.17 1.75 16 17 H 0.10 1.55 5.49 -51.93 -0.29 1.26 16 18 C 0.02 0.35 6.07 -35.62 -0.22 0.14 16 19 C -0.22 -3.16 10.81 -39.70 -0.43 -3.59 16 20 C -0.21 -2.74 10.91 -39.70 -0.43 -3.18 16 21 C -0.05 -0.67 12.09 29.42 0.36 -0.31 16 22 O -0.16 -2.45 10.65 5.68 0.06 -2.38 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.04 6.26 -51.93 -0.33 0.71 16 27 H 0.05 1.04 6.12 -51.93 -0.32 0.72 16 28 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 29 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.06 0.90 5.80 -51.93 -0.30 0.60 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -31.43 308.48 -8.51 -39.94 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.84 Total: 0.19 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -1.93 Total: -23.45 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.43 Total: -35.70 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.06 Total: -2.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.43 -8.51 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116287683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.925 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds