Wall clock time and date at job start Mon Mar 30 2020 07:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48504 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46961 * 300.00139 * 3 2 1 6 6 H 1.48497 * 109.47315 * 59.99764 * 3 2 1 7 7 C 1.37874 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99588 * 359.72900 * 7 2 1 10 10 C 1.53002 * 109.47059 * 180.27280 * 9 7 2 11 11 C 1.53000 * 109.46921 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46698 * 185.44217 * 11 10 9 13 13 C 1.47896 * 111.00216 * 65.23897 * 12 11 10 14 14 C 1.53993 * 107.06114 * 214.15516 * 13 12 11 15 15 C 1.54604 * 105.13511 * 1.22339 * 14 13 12 16 16 C 1.48529 * 111.00029 * 307.84026 * 12 11 10 17 17 H 1.08997 * 110.66993 * 41.29053 * 16 12 11 18 18 C 1.50702 * 110.66992 * 278.15897 * 16 12 11 19 19 C 1.34515 * 125.79275 * 139.99959 * 18 16 12 20 20 C 1.41379 * 106.83929 * 180.02562 * 19 18 16 21 21 C 1.34517 * 106.84518 * 359.97438 * 20 19 18 22 22 O 1.34306 * 108.41813 * 359.73983 * 21 20 19 23 23 H 0.97000 * 120.00098 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46976 * 300.27019 * 9 7 2 25 25 H 1.08995 * 109.47503 * 60.26992 * 9 7 2 26 26 H 1.08994 * 109.47075 * 300.00041 * 10 9 7 27 27 H 1.09003 * 109.46961 * 59.99748 * 10 9 7 28 28 H 1.08996 * 109.47492 * 305.43598 * 11 10 9 29 29 H 1.09001 * 109.47331 * 65.44618 * 11 10 9 30 30 H 1.09001 * 109.91996 * 333.50775 * 13 12 11 31 31 H 1.08999 * 109.91643 * 94.80055 * 13 12 11 32 32 H 1.08998 * 110.30802 * 120.13828 * 14 13 12 33 33 H 1.09001 * 110.30852 * 242.31184 * 14 13 12 34 34 H 1.09004 * 110.72210 * 140.31867 * 15 14 13 35 35 H 1.08998 * 110.72257 * 263.42212 * 15 14 13 36 36 H 1.07995 * 126.57510 * 0.03687 * 19 18 16 37 37 H 1.08004 * 126.57786 * 180.02562 * 20 19 18 38 38 H 1.07993 * 125.79185 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0073 10 6 2.2454 -3.6620 0.0134 11 6 1.4804 -4.9870 0.0209 12 7 2.4298 -6.0997 0.1580 13 6 3.1085 -6.0585 1.4714 14 6 4.5423 -6.5772 1.2555 15 6 4.6380 -6.8811 -0.2574 16 6 3.5088 -6.0071 -0.8585 17 1 3.8410 -4.9755 -0.9741 18 6 3.0462 -6.5695 -2.1779 19 6 3.3182 -6.0555 -3.3909 20 6 2.6912 -6.8940 -4.3410 21 6 2.0741 -7.8706 -3.6519 22 8 2.2976 -7.6724 -2.3424 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5522 0.8976 25 1 0.6245 -2.5615 -0.8823 26 1 2.8721 -3.6088 -0.8768 27 1 2.8721 -3.5996 0.9031 28 1 0.7830 -4.9992 0.8584 29 1 0.9286 -5.0933 -0.9131 30 1 3.1363 -5.0342 1.8431 31 1 2.5846 -6.6995 2.1804 32 1 5.2672 -5.8125 1.5344 33 1 4.7073 -7.4855 1.8350 34 1 5.6093 -6.5804 -0.6505 35 1 4.4558 -7.9382 -0.4507 36 1 3.9034 -5.1720 -3.5989 37 1 2.7058 -6.7740 -5.4142 38 1 1.5004 -8.6796 -4.0793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116287683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:58 Heat of formation + Delta-G solvation = -9.270693 kcal Electronic energy + Delta-G solvation = -18330.189336 eV Core-core repulsion = 15559.077319 eV Total energy + Delta-G solvation = -2771.112017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.41759 -40.29067 -36.08740 -34.27565 -33.87588 -31.96424 -31.65629 -28.30435 -27.83465 -25.02757 -23.36462 -22.52700 -22.24061 -21.72079 -20.43466 -18.57720 -18.08726 -17.15216 -16.81131 -16.48054 -16.33315 -15.88881 -15.32596 -14.57172 -14.50480 -14.32676 -13.72260 -13.66314 -13.49149 -13.40327 -13.04855 -12.88782 -12.59033 -12.44668 -12.40092 -12.36275 -12.05164 -11.69900 -11.43770 -11.32516 -11.21787 -10.77488 -10.58272 -9.35602 -9.30859 -8.22160 -6.34508 0.86858 1.37869 1.38153 1.51433 1.74465 2.19624 2.38460 2.96755 3.10368 3.66871 3.71004 3.94247 4.08323 4.11736 4.22244 4.28355 4.30564 4.36123 4.54609 4.58387 4.76264 4.84884 4.89937 4.97617 4.98039 5.06159 5.08741 5.14253 5.22524 5.24631 5.32752 5.46063 5.60834 5.66308 5.80430 5.90237 5.98906 6.20964 6.35766 6.82088 7.35145 8.89442 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.005500 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.386295 B = 5089.376141 C = 5686.870181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.126 4.126 11 C 0.057 3.943 12 N -0.513 5.513 13 C 0.023 3.977 14 C -0.122 4.122 15 C -0.108 4.108 16 C 0.125 3.875 17 H 0.086 0.914 18 C 0.000 4.000 19 C -0.231 4.231 20 C -0.225 4.225 21 C -0.049 4.049 22 O -0.178 6.178 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.013 1.013 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -16.163 -3.138 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.165 4.165 11 C -0.071 4.071 12 N -0.236 5.236 13 C -0.105 4.105 14 C -0.159 4.159 15 C -0.146 4.146 16 C 0.017 3.983 17 H 0.103 0.897 18 C -0.051 4.051 19 C -0.251 4.251 20 C -0.244 4.244 21 C -0.117 4.117 22 O -0.074 6.074 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.006 0.994 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.721 -16.735 -2.934 19.098 hybrid contribution 0.193 2.069 -0.281 2.096 sum 8.914 -14.667 -3.215 17.461 Atomic orbital electron populations 1.70108 1.07867 1.27761 1.51671 1.25998 0.95760 1.03430 0.94660 0.85397 0.79082 0.78702 0.77865 1.18510 1.20365 1.20208 1.21690 0.93415 0.92323 1.50540 0.92297 1.18907 0.94250 0.93028 0.94659 1.22016 0.98929 0.95038 1.00484 1.22149 0.95309 0.88180 1.01501 1.64965 1.14006 1.41602 1.03040 1.23030 0.95307 1.00858 0.91288 1.22401 0.95202 1.02550 0.95792 1.22521 0.97043 0.99713 0.95308 1.21488 0.91957 0.98519 0.86366 0.89665 1.22252 0.97854 0.88538 0.96417 1.21860 1.07319 1.03676 0.92254 1.22094 1.03421 0.97324 1.01580 1.24800 1.04048 1.03171 0.79642 1.84056 1.55850 1.39274 1.28171 0.92727 0.98942 0.99447 0.93081 0.92282 0.91078 0.92638 0.93471 0.89466 0.90242 0.88888 0.89069 0.90642 0.83410 0.81555 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.59 4.97 29.85 0.15 1.73 16 10 C -0.13 -5.30 4.30 30.59 0.13 -5.17 16 11 C 0.06 2.13 5.32 86.30 0.46 2.59 16 12 N -0.51 -16.14 5.22 -862.59 -4.50 -20.64 16 13 C 0.02 0.60 6.46 86.45 0.56 1.15 16 14 C -0.12 -2.47 6.93 31.48 0.22 -2.26 16 15 C -0.11 -2.40 6.48 31.80 0.21 -2.20 16 16 C 0.12 3.63 2.53 44.52 0.11 3.74 16 17 H 0.09 2.68 5.49 -2.39 -0.01 2.66 16 18 C 0.00 0.01 6.07 24.83 0.15 0.16 16 19 C -0.23 -6.67 10.81 22.19 0.24 -6.43 16 20 C -0.23 -5.50 10.91 22.19 0.24 -5.25 16 21 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 22 O -0.18 -5.31 10.65 -2.59 -0.03 -5.33 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.05 2.13 6.26 -2.39 -0.01 2.12 16 27 H 0.06 2.39 6.12 -2.39 -0.01 2.38 16 28 H 0.07 2.66 8.13 -2.39 -0.02 2.64 16 29 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 30 H 0.05 1.37 5.80 -2.39 -0.01 1.36 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.24 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -68.24 308.48 2.78 -65.46 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.03 Total: 14.26 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 3.97 Total: -42.93 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -4.21 Total: -78.09 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.03 Total: -5.33 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.24 2.78 -65.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116287683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.189 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds