Wall clock time and date at job start Mon Mar 30 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48506 * 109.46822 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.46729 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99900 * 3 2 1 7 7 C 1.37883 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47228 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46996 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46564 * 179.97438 * 11 10 9 13 13 C 1.47838 * 111.00451 * 285.50944 * 12 11 10 14 14 C 1.54907 * 104.79898 * 213.64046 * 13 12 11 15 15 C 1.55140 * 101.65039 * 37.07207 * 14 13 12 16 16 C 1.47449 * 110.99590 * 164.66878 * 12 11 10 17 17 H 1.09001 * 109.88687 * 242.66539 * 16 12 11 18 18 C 1.50701 * 109.88578 * 3.85087 * 16 12 11 19 19 C 1.34510 * 125.78757 * 231.18486 * 18 16 12 20 20 C 1.41388 * 106.84183 * 179.89257 * 19 18 16 21 21 C 1.34519 * 106.83797 * 0.37731 * 20 19 18 22 22 O 1.34304 * 108.42063 * 359.76962 * 21 20 19 23 23 H 0.97000 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.47169 * 59.99709 * 9 7 2 25 25 H 1.09008 * 109.47265 * 300.00210 * 9 7 2 26 26 H 1.08998 * 109.47121 * 60.00223 * 10 9 7 27 27 H 1.08999 * 109.46964 * 300.00077 * 10 9 7 28 28 H 1.08998 * 109.47021 * 60.00140 * 11 10 9 29 29 H 1.08999 * 109.47309 * 299.99844 * 11 10 9 30 30 H 1.09005 * 110.37126 * 332.46890 * 13 12 11 31 31 H 1.08999 * 110.37275 * 94.80540 * 13 12 11 32 32 H 1.08996 * 110.98660 * 278.97753 * 14 13 12 33 33 H 1.09000 * 111.02392 * 155.17852 * 14 13 12 34 34 H 1.09001 * 110.69985 * 205.96762 * 15 14 13 35 35 H 1.08991 * 110.86027 * 82.80343 * 15 14 13 36 36 H 1.08007 * 126.58177 * 0.03166 * 19 18 16 37 37 H 1.07997 * 126.57972 * 180.16203 * 20 19 18 38 38 H 1.07995 * 125.78866 * 179.78727 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.0605 -6.2666 -1.3277 14 6 3.2858 -7.7921 -1.4747 15 6 2.0181 -8.3637 -0.7870 16 6 1.7687 -7.3680 0.3652 17 1 2.1928 -7.7579 1.2906 18 6 0.2888 -7.1381 0.5328 19 6 -0.4490 -7.5061 1.5956 20 6 -1.7763 -7.0945 1.3352 21 6 -1.7718 -6.5071 0.1250 22 8 -0.5183 -6.5364 -0.3562 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6041 0.8923 27 1 2.8725 -3.6048 -0.8877 28 1 0.8544 -5.0450 -0.8895 29 1 0.8524 -5.0448 0.8905 30 1 2.3918 -5.9047 -2.1087 31 1 4.0124 -5.7369 -1.3664 32 1 4.1890 -8.1056 -0.9513 33 1 3.3249 -8.0822 -2.5247 34 1 2.2087 -9.3638 -0.3976 35 1 1.1740 -8.3746 -1.4765 36 1 -0.0950 -8.0159 2.4795 37 1 -2.6306 -7.2293 1.9820 38 1 -2.6304 -6.0835 -0.3746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116287686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:03 Heat of formation + Delta-G solvation = 10.269897 kcal Electronic energy + Delta-G solvation = -18440.483356 eV Core-core repulsion = 15670.218683 eV Total energy + Delta-G solvation = -2770.264673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.57877 -38.87031 -34.30625 -32.90626 -32.36073 -31.03828 -29.94681 -27.23779 -26.09813 -23.11688 -21.78485 -21.59601 -21.26636 -19.94135 -19.58370 -17.13107 -16.21685 -15.94570 -15.71394 -15.34286 -14.52068 -14.39679 -13.91511 -13.32136 -13.02104 -12.75335 -12.69455 -12.44848 -12.32162 -11.98267 -11.42670 -11.30979 -11.17044 -11.00247 -10.83233 -10.63782 -10.49522 -10.41873 -9.78205 -9.55258 -9.26324 -9.01220 -8.48358 -8.28643 -7.96590 -5.94160 -3.95980 1.87483 2.75302 3.12790 3.37175 3.40841 3.43919 4.22769 4.51354 4.58554 4.63958 4.74356 5.08417 5.16345 5.24373 5.39823 5.41361 5.51461 5.72208 5.76718 5.80185 5.83657 5.91524 6.01126 6.08414 6.13615 6.18945 6.25316 6.48906 6.62293 6.75921 6.83491 7.14970 7.24851 7.31765 7.43287 7.75213 7.91213 8.07001 8.50504 9.11084 9.67455 11.17362 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.005579 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.349292 B = 5017.981293 C = 5899.015166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.052 3.948 12 N -0.521 5.521 13 C 0.040 3.960 14 C -0.128 4.128 15 C -0.135 4.135 16 C 0.150 3.850 17 H 0.111 0.889 18 C -0.016 4.016 19 C -0.210 4.210 20 C -0.217 4.217 21 C -0.040 4.040 22 O -0.168 6.168 23 H 0.260 0.740 24 H 0.012 0.988 25 H 0.014 0.986 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -18.308 -0.791 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.075 4.075 12 N -0.244 5.244 13 C -0.087 4.087 14 C -0.166 4.166 15 C -0.174 4.174 16 C 0.041 3.959 17 H 0.129 0.871 18 C -0.067 4.067 19 C -0.230 4.230 20 C -0.236 4.236 21 C -0.107 4.107 22 O -0.064 6.064 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.872 -17.940 -0.701 17.974 hybrid contribution -0.562 0.830 -0.275 1.040 sum 0.310 -17.109 -0.975 17.140 Atomic orbital electron populations 1.69964 1.06062 1.26568 1.51083 1.25028 0.94837 0.99198 0.95436 0.86662 0.79579 0.83171 0.78614 1.20277 1.21328 1.20227 1.21228 0.93009 0.91071 1.50275 0.92740 1.19046 0.94003 0.91370 0.96953 1.21613 0.99034 0.92706 1.00640 1.22675 0.93221 0.90817 1.00738 1.63931 1.30647 1.02543 1.27317 1.23128 1.00125 0.95461 0.90007 1.22722 0.97744 0.95506 1.00672 1.22863 0.98601 0.98724 0.97196 1.21319 0.82721 0.91671 1.00158 0.87117 1.22804 0.93781 0.99763 0.90400 1.21533 0.93536 1.07597 1.00289 1.21756 0.98195 1.05526 0.98106 1.24080 0.85938 1.04235 0.96488 1.84222 1.17884 1.61195 1.43103 0.93049 0.96920 0.96797 0.92776 0.93610 0.93794 0.91418 0.93251 0.89847 0.90541 0.90810 0.90495 0.91065 0.83754 0.83722 0.78375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.10 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.05 1.00 3.44 -3.82 -0.01 0.99 16 12 N -0.52 -8.32 5.12 -224.72 -1.15 -9.47 16 13 C 0.04 0.57 6.05 -2.30 -0.01 0.55 16 14 C -0.13 -1.36 7.08 -24.59 -0.17 -1.54 16 15 C -0.14 -1.48 6.46 -24.91 -0.16 -1.64 16 16 C 0.15 2.01 3.88 -67.87 -0.26 1.74 16 17 H 0.11 1.34 8.12 -51.93 -0.42 0.91 16 18 C -0.02 -0.24 3.85 -35.63 -0.14 -0.38 16 19 C -0.21 -2.86 10.79 -39.70 -0.43 -3.29 16 20 C -0.22 -2.86 10.91 -39.70 -0.43 -3.29 16 21 C -0.04 -0.54 12.09 29.42 0.36 -0.19 16 22 O -0.17 -2.69 7.99 5.70 0.05 -2.64 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 28 H 0.04 0.88 6.14 -51.93 -0.32 0.56 16 29 H 0.07 1.38 6.54 -51.93 -0.34 1.04 16 30 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 36 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.20 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -32.21 307.69 -8.76 -40.96 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.05 Total: -0.77 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.96 Total: -22.94 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.42 Total: -36.44 kcal Atomic # 8 Polarization: -2.69 SS G_CDS: 0.05 Total: -2.64 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.21 -8.76 -40.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116287686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds