Wall clock time and date at job start Mon Mar 30 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48506 * 109.46822 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.46729 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99900 * 3 2 1 7 7 C 1.37883 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47228 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46996 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46564 * 179.97438 * 11 10 9 13 13 C 1.47838 * 111.00451 * 285.50944 * 12 11 10 14 14 C 1.54907 * 104.79898 * 213.64046 * 13 12 11 15 15 C 1.55140 * 101.65039 * 37.07207 * 14 13 12 16 16 C 1.47449 * 110.99590 * 164.66878 * 12 11 10 17 17 H 1.09001 * 109.88687 * 242.66539 * 16 12 11 18 18 C 1.50701 * 109.88578 * 3.85087 * 16 12 11 19 19 C 1.34510 * 125.78757 * 231.18486 * 18 16 12 20 20 C 1.41388 * 106.84183 * 179.89257 * 19 18 16 21 21 C 1.34519 * 106.83797 * 0.37731 * 20 19 18 22 22 O 1.34304 * 108.42063 * 359.76962 * 21 20 19 23 23 H 0.97000 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.47169 * 59.99709 * 9 7 2 25 25 H 1.09008 * 109.47265 * 300.00210 * 9 7 2 26 26 H 1.08998 * 109.47121 * 60.00223 * 10 9 7 27 27 H 1.08999 * 109.46964 * 300.00077 * 10 9 7 28 28 H 1.08998 * 109.47021 * 60.00140 * 11 10 9 29 29 H 1.08999 * 109.47309 * 299.99844 * 11 10 9 30 30 H 1.09005 * 110.37126 * 332.46890 * 13 12 11 31 31 H 1.08999 * 110.37275 * 94.80540 * 13 12 11 32 32 H 1.08996 * 110.98660 * 278.97753 * 14 13 12 33 33 H 1.09000 * 111.02392 * 155.17852 * 14 13 12 34 34 H 1.09001 * 110.69985 * 205.96762 * 15 14 13 35 35 H 1.08991 * 110.86027 * 82.80343 * 15 14 13 36 36 H 1.08007 * 126.58177 * 0.03166 * 19 18 16 37 37 H 1.07997 * 126.57972 * 180.16203 * 20 19 18 38 38 H 1.07995 * 125.78866 * 179.78727 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.0605 -6.2666 -1.3277 14 6 3.2858 -7.7921 -1.4747 15 6 2.0181 -8.3637 -0.7870 16 6 1.7687 -7.3680 0.3652 17 1 2.1928 -7.7579 1.2906 18 6 0.2888 -7.1381 0.5328 19 6 -0.4490 -7.5061 1.5956 20 6 -1.7763 -7.0945 1.3352 21 6 -1.7718 -6.5071 0.1250 22 8 -0.5183 -6.5364 -0.3562 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6041 0.8923 27 1 2.8725 -3.6048 -0.8877 28 1 0.8544 -5.0450 -0.8895 29 1 0.8524 -5.0448 0.8905 30 1 2.3918 -5.9047 -2.1087 31 1 4.0124 -5.7369 -1.3664 32 1 4.1890 -8.1056 -0.9513 33 1 3.3249 -8.0822 -2.5247 34 1 2.2087 -9.3638 -0.3976 35 1 1.1740 -8.3746 -1.4765 36 1 -0.0950 -8.0159 2.4795 37 1 -2.6306 -7.2293 1.9820 38 1 -2.6304 -6.0835 -0.3746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116287686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:03 Heat of formation + Delta-G solvation = -9.694089 kcal Electronic energy + Delta-G solvation = -18441.349059 eV Core-core repulsion = 15670.218683 eV Total energy + Delta-G solvation = -2771.130376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.66776 -40.01936 -36.20275 -34.32019 -33.91790 -32.14304 -31.54118 -28.27462 -27.98487 -24.89019 -22.95332 -22.73482 -22.50349 -21.50636 -20.76398 -18.61264 -18.06245 -17.12053 -16.74946 -16.63200 -16.41441 -16.06908 -15.08603 -14.56231 -14.40543 -14.17304 -14.03349 -13.77065 -13.58918 -13.36163 -13.17745 -12.87587 -12.57531 -12.40127 -12.23490 -12.19332 -12.00529 -11.68709 -11.46704 -11.40284 -11.12933 -10.83205 -10.57172 -9.66777 -9.14443 -8.21535 -6.33578 0.79231 1.38564 1.42687 1.50634 1.71065 2.09830 2.39919 3.01846 3.10991 3.56963 3.68764 3.75162 4.13073 4.14150 4.20236 4.27583 4.38467 4.44408 4.55564 4.67907 4.82409 4.84613 4.89817 4.91578 4.99182 5.03752 5.04844 5.10275 5.22236 5.23961 5.31585 5.48353 5.62293 5.68630 5.81959 5.95479 6.01504 6.22764 6.25570 6.82341 7.35698 8.90541 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.005579 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.349292 B = 5017.981293 C = 5899.015166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.087 4.087 11 C 0.075 3.925 12 N -0.528 5.528 13 C 0.032 3.968 14 C -0.116 4.116 15 C -0.128 4.128 16 C 0.144 3.856 17 H 0.129 0.871 18 C -0.037 4.037 19 C -0.214 4.214 20 C -0.221 4.221 21 C -0.059 4.059 22 O -0.194 6.194 23 H 0.264 0.736 24 H -0.014 1.014 25 H -0.015 1.015 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -19.166 -0.548 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.125 4.125 11 C -0.052 4.052 12 N -0.251 5.251 13 C -0.095 4.095 14 C -0.153 4.153 15 C -0.166 4.166 16 C 0.037 3.963 17 H 0.146 0.854 18 C -0.088 4.088 19 C -0.234 4.234 20 C -0.240 4.240 21 C -0.126 4.126 22 O -0.090 6.090 23 H 0.073 0.927 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.221 -18.824 -0.457 18.960 hybrid contribution -1.039 1.069 -0.333 1.527 sum 1.182 -17.755 -0.790 17.812 Atomic orbital electron populations 1.70105 1.07915 1.27903 1.51521 1.26034 0.95812 1.03513 0.94514 0.85453 0.78266 0.77754 0.79293 1.19022 1.20595 1.19068 1.21645 0.93533 0.92272 1.50859 0.92170 1.18910 0.94251 0.93275 0.94229 1.21374 0.97892 0.92736 1.00538 1.22220 0.92904 0.90778 0.99323 1.63850 1.29855 1.02853 1.28579 1.23229 0.99373 0.98409 0.88520 1.22705 0.98203 0.92327 1.02099 1.22848 0.98273 0.99465 0.96031 1.21541 0.81973 0.90874 1.01929 0.85363 1.23152 0.94474 1.00375 0.90754 1.21909 0.93677 1.07239 1.00582 1.22132 0.98937 1.04839 0.98101 1.24679 0.85956 1.04691 0.97312 1.84187 1.18859 1.61907 1.44096 0.92705 0.99569 0.99635 0.93016 0.93242 0.95197 0.93008 0.94941 0.89875 0.88800 0.89019 0.87563 0.92226 0.81607 0.81431 0.76331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.82 13.29 21.45 0.28 -58.53 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.68 9.11 25.60 0.23 -32.45 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.76 4.97 29.85 0.15 1.91 16 10 C -0.09 -4.00 5.27 30.60 0.16 -3.84 16 11 C 0.08 2.99 3.44 86.31 0.30 3.28 16 12 N -0.53 -16.61 5.12 -864.88 -4.43 -21.04 16 13 C 0.03 0.87 6.05 86.77 0.52 1.40 16 14 C -0.12 -2.15 7.08 31.98 0.23 -1.92 16 15 C -0.13 -2.51 6.46 31.77 0.21 -2.30 16 16 C 0.14 3.68 3.88 44.51 0.17 3.86 16 17 H 0.13 2.79 8.12 -2.39 -0.02 2.77 16 18 C -0.04 -1.08 3.85 24.83 0.10 -0.98 16 19 C -0.21 -5.64 10.79 22.19 0.24 -5.40 16 20 C -0.22 -5.68 10.91 22.19 0.24 -5.44 16 21 C -0.06 -1.66 12.09 66.97 0.81 -0.85 16 22 O -0.19 -6.34 7.99 -2.52 -0.02 -6.36 16 23 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 24 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 25 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 26 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 2.20 7.68 -2.39 -0.02 2.18 16 28 H 0.03 1.26 6.14 -2.39 -0.01 1.25 16 29 H 0.05 2.20 6.54 -2.39 -0.02 2.18 16 30 H 0.03 0.99 7.53 -2.38 -0.02 0.97 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 36 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.22 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -70.58 307.69 2.69 -67.88 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.02 Total: 12.88 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.82 Total: -42.35 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -4.15 Total: -79.57 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.02 Total: -6.36 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.58 2.69 -67.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116287686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.188 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds