Wall clock time and date at job start Mon Mar 30 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47207 * 2 1 4 4 C 1.50694 * 109.47530 * 120.00140 * 2 1 3 5 5 H 1.08001 * 120.00373 * 119.99573 * 4 2 1 6 6 C 1.37880 * 119.99752 * 300.00130 * 4 2 1 7 7 N 1.31518 * 119.99980 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47075 * 90.00189 * 8 6 4 10 10 H 1.48498 * 109.47069 * 210.00111 * 8 6 4 11 11 H 1.48499 * 109.47237 * 329.99910 * 8 6 4 12 12 N 1.46903 * 109.47251 * 240.00022 * 2 1 3 13 13 C 1.46902 * 110.99831 * 84.99731 * 12 2 1 14 14 C 1.50708 * 109.46937 * 180.02562 * 13 12 2 15 15 C 1.32580 * 119.99744 * 125.00453 * 14 13 12 16 16 C 1.47792 * 119.99686 * 180.27669 * 15 14 13 17 17 C 1.39554 * 120.11930 * 359.44364 * 16 15 14 18 18 C 1.37919 * 119.88391 * 179.77044 * 17 16 15 19 19 C 1.38571 * 120.11743 * 0.52856 * 18 17 16 20 20 F 1.35104 * 119.88619 * 179.72160 * 19 18 17 21 21 C 1.38572 * 120.23550 * 359.70354 * 19 18 17 22 22 C 1.37929 * 120.11213 * 0.03856 * 21 19 18 23 23 H 1.08999 * 109.47181 * 299.99699 * 1 2 3 24 24 H 1.09000 * 109.46922 * 59.99964 * 1 2 3 25 25 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99942 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00004 * 208.95205 * 12 2 1 28 28 H 1.09005 * 109.47160 * 60.00360 * 13 12 2 29 29 H 1.08996 * 109.47226 * 299.99815 * 13 12 2 30 30 H 1.07991 * 119.99807 * 304.99696 * 14 13 12 31 31 H 1.08002 * 119.99925 * 359.97438 * 15 14 13 32 32 H 1.08005 * 120.05136 * 0.02562 * 17 16 15 33 33 H 1.08007 * 119.94389 * 180.22935 * 18 17 16 34 34 H 1.07993 * 119.94572 * 180.02562 * 21 19 18 35 35 H 1.08008 * 120.05414 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3215 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5873 -0.5218 -3.5561 15 6 1.8778 -0.5259 -4.6760 16 6 2.3700 -1.2610 -5.8599 17 6 3.5868 -1.9420 -5.8053 18 6 4.0392 -2.6304 -6.9115 19 6 3.2931 -2.6376 -8.0792 20 9 3.7434 -3.3088 -9.1618 21 6 2.0864 -1.9590 -8.1403 22 6 1.6223 -1.2719 -7.0381 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7095 1.1618 3.4843 27 1 2.9173 -1.1205 -1.0287 28 1 2.7588 1.0463 -2.1182 29 1 1.0870 0.6163 -2.5525 30 1 3.5272 -1.0518 -3.5103 31 1 0.9377 0.0039 -4.7216 32 1 4.1712 -1.9334 -4.8971 33 1 4.9791 -3.1609 -6.8692 34 1 1.5085 -1.9680 -9.0526 35 1 0.6819 -0.7430 -7.0870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:47 Heat of formation + Delta-G solvation = -28.379258 kcal Electronic energy + Delta-G solvation = -16615.040915 eV Core-core repulsion = 13719.639984 eV Total energy + Delta-G solvation = -2895.400931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88621 -40.05067 -38.02330 -35.65711 -34.02127 -32.13615 -31.37595 -29.31174 -27.35226 -25.65266 -24.19273 -22.93642 -21.71083 -20.50271 -18.72788 -18.48397 -17.24265 -17.07811 -16.67418 -16.57998 -15.88954 -15.51933 -15.27092 -14.86727 -14.48238 -14.43345 -13.86903 -13.72178 -13.57437 -13.24766 -12.86215 -12.80653 -12.72816 -12.35544 -12.19310 -12.15360 -11.83778 -11.68855 -10.97805 -10.87884 -10.56850 -10.08592 -9.18041 -8.85001 -8.13484 -6.27869 -0.18338 0.30067 1.42640 1.44177 1.47835 1.54955 2.42114 2.80900 3.15300 3.29313 3.60927 3.75091 3.93792 3.96749 4.17593 4.28186 4.38266 4.56150 4.59405 4.79100 4.86695 4.99013 5.03429 5.08098 5.16533 5.21776 5.25332 5.32985 5.47363 5.66758 5.73161 5.83999 5.89494 5.94343 6.22449 6.46612 6.76763 7.00047 7.42782 8.92218 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048315 B = 0.003234 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.389232 B = 8656.955313 C = 9058.881856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.684 5.684 13 C 0.085 3.915 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.066 4.066 17 C -0.097 4.097 18 C -0.154 4.154 19 C 0.072 3.928 20 F -0.149 7.149 21 C -0.152 4.152 22 C -0.085 4.085 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.263 0.737 27 H 0.334 0.666 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 -3.974 -19.168 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 H -0.011 1.011 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.315 5.315 13 C -0.044 4.044 14 C -0.140 4.140 15 C -0.142 4.142 16 C -0.066 4.066 17 C -0.115 4.115 18 C -0.172 4.172 19 C 0.053 3.947 20 F -0.128 7.128 21 C -0.170 4.170 22 C -0.103 4.103 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.052 -4.126 -19.237 19.910 hybrid contribution 1.021 0.228 1.044 1.478 sum 4.073 -3.899 -18.193 19.047 Atomic orbital electron populations 1.21551 0.97748 0.98858 0.99109 1.18943 0.92789 0.90862 0.86874 1.01117 1.21615 1.31761 1.12792 0.91627 0.92116 1.25749 0.95136 0.95692 1.02101 1.70023 1.37433 1.24094 1.24220 0.85475 0.77989 0.79072 0.78598 1.20046 1.20917 1.19201 1.60718 1.32389 1.33195 1.05212 1.21023 0.99756 0.93572 0.90028 1.23286 0.99584 0.98019 0.93149 1.21644 1.00151 1.00353 0.92009 1.19283 0.94962 0.98041 0.94306 1.21402 0.95701 0.95770 0.98642 1.21262 1.01715 1.02230 0.92004 1.18048 0.95564 0.96987 0.84136 1.91472 1.89235 1.78514 1.53562 1.21314 0.95424 0.99102 1.01198 1.21397 1.00254 0.97825 0.90855 0.92449 0.95800 0.95399 0.92807 0.84823 0.95434 0.91510 0.85954 0.85429 0.83827 0.83268 0.82758 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.21 10.86 2.60 44.17 0.11 10.97 16 3 H -0.03 -1.60 7.80 -2.39 -0.02 -1.62 16 4 C -0.54 -29.52 8.59 25.60 0.22 -29.30 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.51 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.68 -28.52 6.29 -499.45 -3.14 -31.66 16 13 C 0.09 2.90 5.93 85.56 0.51 3.41 16 14 C -0.12 -3.26 9.20 24.53 0.23 -3.03 16 15 C -0.12 -2.88 9.52 23.65 0.23 -2.66 16 16 C -0.07 -1.40 5.87 -20.12 -0.12 -1.52 16 17 C -0.10 -1.97 9.40 22.51 0.21 -1.76 16 18 C -0.15 -2.95 10.01 22.27 0.22 -2.72 16 19 C 0.07 1.45 7.30 22.43 0.16 1.61 16 20 F -0.15 -3.19 17.26 44.97 0.78 -2.41 16 21 C -0.15 -2.67 10.01 22.28 0.22 -2.45 16 22 C -0.09 -1.54 9.78 22.51 0.22 -1.32 16 23 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 24 H 0.02 1.04 7.45 -2.39 -0.02 1.03 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 13.41 8.22 -89.69 -0.74 12.67 16 28 H 0.03 0.97 8.06 -2.38 -0.02 0.95 16 29 H 0.07 2.30 7.10 -2.39 -0.02 2.28 16 30 H 0.12 2.91 6.03 -2.91 -0.02 2.89 16 31 H 0.13 2.77 7.87 -2.91 -0.02 2.75 16 32 H 0.14 2.59 6.16 -2.91 -0.02 2.57 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -60.65 301.44 3.59 -57.06 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.36 Total: 17.07 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.33 Total: -32.68 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.90 Total: -84.18 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.65 3.59 -57.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.685 kcal (2) G-P(sol) polarization free energy of solvation -60.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds