Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47086 * 2 1 4 4 C 1.50701 * 109.47111 * 239.99911 * 2 1 3 5 5 H 1.08008 * 119.99901 * 240.00182 * 4 2 1 6 6 C 1.37878 * 120.00053 * 59.99931 * 4 2 1 7 7 N 1.31515 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99881 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47378 * 60.00040 * 8 6 4 10 10 H 1.48500 * 109.46939 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47367 * 299.99650 * 8 6 4 12 12 N 1.46904 * 109.47054 * 120.00173 * 2 1 3 13 13 C 1.46907 * 110.99633 * 274.99819 * 12 2 1 14 14 C 1.50697 * 109.46684 * 179.97438 * 13 12 2 15 15 C 1.32584 * 119.99768 * 125.00192 * 14 13 12 16 16 C 1.47798 * 120.00157 * 179.72263 * 15 14 13 17 17 C 1.39555 * 120.11255 * 359.72656 * 16 15 14 18 18 C 1.37926 * 119.87450 * 179.74173 * 17 16 15 19 19 C 1.38571 * 120.12172 * 0.53252 * 18 17 16 20 20 F 1.35100 * 119.88453 * 179.74508 * 19 18 17 21 21 C 1.38578 * 120.23307 * 359.71756 * 19 18 17 22 22 C 1.37927 * 120.11540 * 0.02799 * 21 19 18 23 23 H 1.08997 * 109.47293 * 60.00500 * 1 2 3 24 24 H 1.09007 * 109.47318 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47324 * 300.00101 * 1 2 3 26 26 H 0.97001 * 119.99959 * 179.97438 * 7 6 4 27 27 H 1.00901 * 110.99854 * 151.04618 * 12 2 1 28 28 H 1.08999 * 109.46948 * 60.00007 * 13 12 2 29 29 H 1.08991 * 109.46892 * 299.99937 * 13 12 2 30 30 H 1.08000 * 120.00720 * 304.72405 * 14 13 12 31 31 H 1.08000 * 119.99453 * 359.72216 * 15 14 13 32 32 H 1.07996 * 120.06152 * 359.97438 * 17 16 15 33 33 H 1.08008 * 119.93619 * 180.25551 * 18 17 16 34 34 H 1.07997 * 119.93961 * 179.97438 * 21 19 18 35 35 H 1.07994 * 120.05672 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5560 15 6 3.6447 -0.0723 4.2174 16 6 4.1362 -0.7990 5.4069 17 6 3.4856 -1.9554 5.8393 18 6 3.9516 -2.6326 6.9467 19 6 5.0571 -2.1606 7.6362 20 9 5.5064 -2.8249 8.7234 21 6 5.7037 -1.0099 7.2142 22 6 5.2491 -0.3279 6.1049 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7095 1.1618 -3.4844 27 1 2.9173 -1.1206 1.0287 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0461 2.1182 30 1 2.0851 -1.4190 3.8865 31 1 4.1470 0.8249 3.8870 32 1 2.6211 -2.3214 5.3055 33 1 3.4513 -3.5300 7.2798 34 1 6.5645 -0.6460 7.7553 35 1 5.7534 0.5690 5.7770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134971762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -12.908033 kcal Electronic energy + Delta-G solvation = -16612.916078 eV Core-core repulsion = 13718.186030 eV Total energy + Delta-G solvation = -2894.730048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03366 -39.22333 -36.42558 -34.24930 -32.30416 -31.35228 -29.97908 -27.80191 -25.37871 -24.31969 -23.33893 -21.93118 -19.80732 -19.34728 -17.90315 -16.76067 -16.18383 -15.99598 -15.73130 -14.96978 -14.62479 -14.00032 -13.83595 -13.72507 -13.56180 -13.00434 -12.76860 -12.46600 -12.31579 -11.76857 -11.56286 -11.15554 -10.95441 -10.80428 -10.76658 -10.33655 -10.15952 -10.05588 -9.87008 -9.31046 -8.87972 -8.50171 -8.02732 -7.34669 -6.05391 -4.12230 0.69706 1.07636 2.42616 3.29687 3.34144 3.36988 3.65074 4.10075 4.37946 4.51310 4.66423 4.68797 5.05817 5.09874 5.24693 5.26650 5.49629 5.59306 5.73020 5.88184 5.94554 6.01775 6.08069 6.21035 6.27532 6.68136 6.77621 6.79745 6.88998 7.10199 7.19765 7.45940 7.74824 7.85963 8.23766 8.33438 8.61912 8.97684 9.53886 11.00920 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.003252 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.879023 B = 8607.167754 C = 8804.905655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.686 5.686 13 C 0.081 3.919 14 C -0.101 4.101 15 C -0.151 4.151 16 C -0.046 4.046 17 C -0.092 4.092 18 C -0.148 4.148 19 C 0.083 3.917 20 F -0.144 7.144 21 C -0.151 4.151 22 C -0.089 4.089 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.004 0.996 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -2.398 17.369 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.048 4.048 14 C -0.120 4.120 15 C -0.170 4.170 16 C -0.046 4.046 17 C -0.110 4.110 18 C -0.167 4.167 19 C 0.064 3.936 20 F -0.123 7.123 21 C -0.170 4.170 22 C -0.107 4.107 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.744 -2.539 17.415 18.513 hybrid contribution 1.154 -0.017 -0.862 1.440 sum 6.898 -2.556 16.553 18.114 Atomic orbital electron populations 1.21725 0.97825 0.99407 0.99398 1.19125 0.92658 0.92366 0.85477 0.98087 1.21230 1.31636 1.12603 0.90455 0.92217 1.24922 0.95004 0.94988 0.99069 1.69885 1.36545 1.22831 1.23636 0.86566 0.79087 0.79797 0.81991 1.20147 1.21280 1.20303 1.60750 1.32187 1.32912 1.05839 1.21052 1.00077 0.93761 0.89927 1.23653 0.94785 0.98543 0.94994 1.21591 0.98835 1.00832 0.95727 1.19201 0.95109 0.94862 0.95441 1.21267 0.99822 0.94392 0.95516 1.21077 0.96768 1.01761 0.97094 1.17787 0.96207 0.93280 0.86319 1.91481 1.88713 1.79969 1.52139 1.21055 1.01589 0.95392 0.98952 1.21135 0.95790 0.99623 0.94132 0.90043 0.94906 0.97688 0.92822 0.85054 0.90515 0.95531 0.86583 0.86290 0.84461 0.84770 0.84878 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.29 2.60 -68.86 -0.18 5.11 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.19 8.59 -34.44 -0.30 -14.49 16 5 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -14.32 6.29 -109.22 -0.69 -15.00 16 13 C 0.08 1.39 5.93 -4.97 -0.03 1.36 16 14 C -0.10 -1.41 9.20 -36.21 -0.33 -1.74 16 15 C -0.15 -1.88 9.52 -37.58 -0.36 -2.23 16 16 C -0.05 -0.53 5.87 -105.01 -0.62 -1.15 16 17 C -0.09 -1.01 9.40 -39.20 -0.37 -1.38 16 18 C -0.15 -1.55 10.01 -39.57 -0.40 -1.95 16 19 C 0.08 0.91 7.30 -39.33 -0.29 0.63 16 20 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 21 C -0.15 -1.51 10.01 -39.57 -0.40 -1.90 16 22 C -0.09 -0.90 9.78 -39.21 -0.38 -1.29 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.33 6.82 8.22 -39.29 -0.32 6.50 16 28 H 0.08 1.34 7.44 -51.93 -0.39 0.95 16 29 H 0.03 0.46 7.73 -51.93 -0.40 0.06 16 30 H 0.12 1.52 6.03 -52.49 -0.32 1.20 16 31 H 0.12 1.39 7.87 -52.49 -0.41 0.98 16 32 H 0.14 1.37 6.16 -52.49 -0.32 1.04 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -28.49 301.44 -8.39 -36.88 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.50 Total: 3.93 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -3.40 Total: -20.16 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.06 Total: -39.65 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.49 -8.39 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.968 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds