Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47086 * 2 1 4 4 C 1.50701 * 109.47111 * 239.99911 * 2 1 3 5 5 H 1.08008 * 119.99901 * 240.00182 * 4 2 1 6 6 C 1.37878 * 120.00053 * 59.99931 * 4 2 1 7 7 N 1.31515 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99881 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47378 * 60.00040 * 8 6 4 10 10 H 1.48500 * 109.46939 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47367 * 299.99650 * 8 6 4 12 12 N 1.46904 * 109.47054 * 120.00173 * 2 1 3 13 13 C 1.46907 * 110.99633 * 274.99819 * 12 2 1 14 14 C 1.50697 * 109.46684 * 179.97438 * 13 12 2 15 15 C 1.32584 * 119.99768 * 125.00192 * 14 13 12 16 16 C 1.47798 * 120.00157 * 179.72263 * 15 14 13 17 17 C 1.39555 * 120.11255 * 359.72656 * 16 15 14 18 18 C 1.37926 * 119.87450 * 179.74173 * 17 16 15 19 19 C 1.38571 * 120.12172 * 0.53252 * 18 17 16 20 20 F 1.35100 * 119.88453 * 179.74508 * 19 18 17 21 21 C 1.38578 * 120.23307 * 359.71756 * 19 18 17 22 22 C 1.37927 * 120.11540 * 0.02799 * 21 19 18 23 23 H 1.08997 * 109.47293 * 60.00500 * 1 2 3 24 24 H 1.09007 * 109.47318 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47324 * 300.00101 * 1 2 3 26 26 H 0.97001 * 119.99959 * 179.97438 * 7 6 4 27 27 H 1.00901 * 110.99854 * 151.04618 * 12 2 1 28 28 H 1.08999 * 109.46948 * 60.00007 * 13 12 2 29 29 H 1.08991 * 109.46892 * 299.99937 * 13 12 2 30 30 H 1.08000 * 120.00720 * 304.72405 * 14 13 12 31 31 H 1.08000 * 119.99453 * 359.72216 * 15 14 13 32 32 H 1.07996 * 120.06152 * 359.97438 * 17 16 15 33 33 H 1.08008 * 119.93619 * 180.25551 * 18 17 16 34 34 H 1.07997 * 119.93961 * 179.97438 * 21 19 18 35 35 H 1.07994 * 120.05672 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5560 15 6 3.6447 -0.0723 4.2174 16 6 4.1362 -0.7990 5.4069 17 6 3.4856 -1.9554 5.8393 18 6 3.9516 -2.6326 6.9467 19 6 5.0571 -2.1606 7.6362 20 9 5.5064 -2.8249 8.7234 21 6 5.7037 -1.0099 7.2142 22 6 5.2491 -0.3279 6.1049 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7095 1.1618 -3.4844 27 1 2.9173 -1.1206 1.0287 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0461 2.1182 30 1 2.0851 -1.4190 3.8865 31 1 4.1470 0.8249 3.8870 32 1 2.6211 -2.3214 5.3055 33 1 3.4513 -3.5300 7.2798 34 1 6.5645 -0.6460 7.7553 35 1 5.7534 0.5690 5.7770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = -28.292740 kcal Electronic energy + Delta-G solvation = -16613.583209 eV Core-core repulsion = 13718.186030 eV Total energy + Delta-G solvation = -2895.397179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.89291 -40.06226 -38.02902 -35.67426 -34.01577 -32.14309 -31.37828 -29.27790 -27.36581 -25.69276 -24.19055 -22.95483 -21.70411 -20.40507 -18.77009 -18.51152 -17.30955 -16.96176 -16.84555 -16.58547 -15.83869 -15.50149 -15.14312 -14.95165 -14.48946 -14.34889 -13.88998 -13.78763 -13.54559 -13.18162 -13.06123 -12.79456 -12.63820 -12.47280 -12.18206 -12.15541 -11.78931 -11.67544 -11.03835 -10.83252 -10.56871 -10.09284 -9.08194 -8.98172 -8.13314 -6.27907 -0.19800 0.29356 1.43043 1.45281 1.45536 1.53023 2.42141 2.79807 3.15281 3.28614 3.56215 3.74917 3.90169 3.96061 4.23668 4.26643 4.36779 4.49665 4.70489 4.79304 4.87266 4.98457 5.02911 5.08253 5.15798 5.21381 5.25547 5.32457 5.47402 5.65271 5.71053 5.80737 5.89541 5.93644 6.22705 6.45924 6.76729 6.99465 7.42702 8.92095 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.003252 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.879023 B = 8607.167754 C = 8804.905655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.086 3.914 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.066 4.066 17 C -0.096 4.096 18 C -0.153 4.153 19 C 0.073 3.927 20 F -0.149 7.149 21 C -0.152 4.152 22 C -0.085 4.085 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.334 0.666 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -3.005 18.195 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.011 1.011 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.315 5.315 13 C -0.043 4.043 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.067 4.067 17 C -0.114 4.114 18 C -0.172 4.172 19 C 0.054 3.946 20 F -0.128 7.128 21 C -0.171 4.171 22 C -0.103 4.103 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.850 -3.152 18.264 19.759 hybrid contribution 0.872 0.193 -0.986 1.330 sum 7.722 -2.959 17.278 19.155 Atomic orbital electron populations 1.21557 0.97689 0.98944 0.99138 1.18934 0.92792 0.90852 0.86841 1.01149 1.21589 1.31866 1.12824 0.91668 0.92184 1.25741 0.95130 0.95668 1.02074 1.70015 1.37400 1.24026 1.24291 0.85537 0.78760 0.78661 0.78226 1.19620 1.20940 1.19523 1.60648 1.32308 1.33281 1.05239 1.21008 1.00005 0.93462 0.89846 1.23325 0.96413 0.99498 0.94683 1.21710 0.97357 1.00319 0.95093 1.19264 0.96219 0.95496 0.95674 1.21414 1.00013 0.94301 0.95659 1.21269 0.96764 1.02305 0.96864 1.18050 0.96559 0.93722 0.86304 1.91472 1.88777 1.80126 1.52383 1.21313 1.02024 0.94869 0.98862 1.21389 0.95142 1.00084 0.93694 0.92449 0.95275 0.95766 0.92786 0.84899 0.91110 0.95933 0.85767 0.85557 0.83807 0.83248 0.82766 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.19 71.98 0.66 -5.07 16 2 C 0.21 10.89 2.60 44.17 0.11 11.01 16 3 H -0.03 -1.62 7.80 -2.39 -0.02 -1.64 16 4 C -0.54 -29.68 8.59 25.60 0.22 -29.46 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.73 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 8 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.68 -28.56 6.29 -499.46 -3.14 -31.70 16 13 C 0.09 2.92 5.93 85.55 0.51 3.43 16 14 C -0.12 -3.23 9.20 24.53 0.23 -3.00 16 15 C -0.13 -2.91 9.52 23.65 0.23 -2.69 16 16 C -0.07 -1.40 5.87 -20.11 -0.12 -1.52 16 17 C -0.10 -1.94 9.40 22.51 0.21 -1.73 16 18 C -0.15 -2.93 10.01 22.28 0.22 -2.71 16 19 C 0.07 1.46 7.30 22.43 0.16 1.62 16 20 F -0.15 -3.16 17.26 44.97 0.78 -2.39 16 21 C -0.15 -2.65 10.01 22.28 0.22 -2.43 16 22 C -0.09 -1.52 9.78 22.51 0.22 -1.30 16 23 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 24 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.33 13.66 8.22 -89.69 -0.74 12.92 16 28 H 0.07 2.46 7.44 -2.39 -0.02 2.45 16 29 H 0.02 0.78 7.73 -2.39 -0.02 0.77 16 30 H 0.12 3.10 6.03 -2.91 -0.02 3.08 16 31 H 0.13 2.71 7.87 -2.91 -0.02 2.69 16 32 H 0.14 2.64 6.16 -2.91 -0.02 2.63 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -60.18 301.44 3.59 -56.59 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.36 Total: 17.52 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.33 Total: -32.67 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.90 Total: -84.23 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -60.18 3.59 -56.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.298 kcal (2) G-P(sol) polarization free energy of solvation -60.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds