Wall clock time and date at job start Mon Mar 30 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46897 * 109.47364 * 239.99717 * 2 1 3 13 13 C 1.47164 * 110.99585 * 60.00244 * 12 2 1 14 14 C 1.52879 * 108.52117 * 52.14899 * 13 12 2 15 15 C 1.50724 * 109.97550 * 50.35434 * 14 13 12 16 16 C 1.38698 * 118.46732 * 163.15031 * 15 14 13 17 17 C 1.37991 * 120.38327 * 179.82719 * 16 15 14 18 18 C 1.38478 * 119.80674 * 359.95431 * 17 16 15 19 19 F 1.35099 * 120.09463 * 180.11762 * 18 17 16 20 20 C 1.38237 * 119.81424 * 0.09380 * 18 17 16 21 21 C 1.37855 * 121.64941 * 343.09822 * 15 14 13 22 22 C 1.46632 * 110.99792 * 182.97338 * 12 2 1 23 23 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 24 24 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 25 25 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.62715 * 171.86065 * 13 12 2 28 28 H 1.08996 * 109.63171 * 292.23961 * 13 12 2 29 29 H 1.09009 * 109.38968 * 170.50530 * 14 13 12 30 30 H 1.09002 * 109.39050 * 290.29735 * 14 13 12 31 31 H 1.08000 * 119.80835 * 359.79970 * 16 15 14 32 32 H 1.08008 * 120.09163 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.82255 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.30470 * 49.50086 * 22 12 2 35 35 H 1.09009 * 109.29651 * 168.87558 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.5479 -0.0252 -2.4232 14 6 1.8997 1.4598 -2.3330 15 6 3.3535 1.6235 -1.9704 16 6 3.9532 2.8559 -2.1831 17 6 5.2811 3.0506 -1.8621 18 6 6.0188 2.0097 -1.3236 19 9 7.3186 2.1946 -1.0049 20 6 5.4214 0.7811 -1.1125 21 6 4.0874 0.5853 -1.4376 22 6 3.4838 -0.7738 -1.1982 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9031 -0.5278 4.4376 27 1 2.0372 -0.4653 -3.2921 28 1 0.4680 -0.1439 -2.5119 29 1 1.7111 1.9355 -3.2955 30 1 1.2823 1.9323 -1.5689 31 1 3.3778 3.6677 -2.6028 32 1 5.7435 4.0121 -2.0301 33 1 5.9965 -0.0306 -0.6921 34 1 3.8228 -1.1539 -0.2345 35 1 3.8073 -1.4555 -1.9849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135147467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:17 Heat of formation + Delta-G solvation = -8.397980 kcal Electronic energy + Delta-G solvation = -18679.404689 eV Core-core repulsion = 15784.870211 eV Total energy + Delta-G solvation = -2894.534478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.65157 -40.08752 -36.99933 -33.18959 -32.33695 -31.22577 -29.35424 -28.76228 -25.11725 -24.16444 -22.99748 -22.18537 -21.00668 -18.47781 -17.24419 -16.59919 -16.24995 -15.63541 -15.35560 -14.89561 -14.44615 -14.15836 -13.90367 -13.59844 -13.33047 -12.91038 -12.69282 -12.35073 -12.08716 -11.92981 -11.64066 -11.24633 -11.03434 -10.85013 -10.68709 -10.49505 -10.32392 -10.16135 -9.51923 -9.04737 -8.60788 -8.56931 -8.15971 -7.48859 -6.09262 -4.07442 1.40542 1.47572 3.24068 3.33904 3.36515 3.79738 4.37497 4.48247 4.69679 4.89689 5.01237 5.13220 5.23696 5.32273 5.45706 5.52240 5.71309 5.78636 6.02610 6.08978 6.14893 6.19075 6.25541 6.31781 6.35933 6.40168 6.50913 6.54050 6.63151 6.79099 6.92719 7.17167 7.26647 7.54984 7.86624 7.98922 8.60295 8.95266 9.52874 11.03461 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008873 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.759736 B = 3154.767828 C = 3621.169998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.009 0.991 4 C -0.507 4.507 5 H 0.083 0.917 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.511 5.511 13 C 0.048 3.952 14 C -0.118 4.118 15 C -0.086 4.086 16 C -0.095 4.095 17 C -0.164 4.164 18 C 0.089 3.911 19 F -0.146 7.146 20 C -0.145 4.145 21 C -0.058 4.058 22 C 0.090 3.910 23 H 0.041 0.959 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.264 0.736 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 5.837 -12.508 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.068 3.932 3 H 0.027 0.973 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.232 5.232 13 C -0.081 4.081 14 C -0.156 4.156 15 C -0.086 4.086 16 C -0.113 4.113 17 C -0.183 4.183 18 C 0.070 3.930 19 F -0.125 7.125 20 C -0.165 4.165 21 C -0.060 4.060 22 C -0.038 4.038 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.069 5.326 -12.271 13.536 hybrid contribution -0.001 1.902 0.421 1.948 sum 2.068 7.227 -11.850 14.033 Atomic orbital electron populations 1.22193 0.98570 1.01387 0.98271 1.19786 0.91388 0.93440 0.88620 0.97334 1.20951 1.32012 1.13523 0.87977 0.89953 1.24892 0.95782 0.96472 0.95843 1.69873 1.45654 1.40201 0.97881 0.86916 0.80781 0.83968 0.76891 1.20532 1.22522 1.19464 1.62598 1.07384 1.51164 1.02044 1.22237 1.01067 0.90577 0.94235 1.21131 0.92351 1.00483 1.01648 1.19638 0.96191 0.93242 0.99536 1.20879 0.93859 0.96791 0.99737 1.20931 0.95169 0.98582 1.03639 1.17617 0.78597 0.95259 1.01539 1.91461 1.34181 1.95918 1.90918 1.21090 0.95822 0.96455 1.03104 1.20482 0.92661 0.98241 0.94623 1.21252 0.88225 0.90592 1.03751 0.94092 0.95184 0.92020 0.92620 0.91453 0.90306 0.90982 0.90016 0.85656 0.85365 0.84745 0.87069 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.31 37.16 0.31 -2.81 16 2 C 0.17 3.97 0.93 -68.87 -0.06 3.90 16 3 H 0.01 0.22 4.59 -51.93 -0.24 -0.02 16 4 C -0.51 -13.73 8.37 -34.44 -0.29 -14.02 16 5 H 0.08 2.41 6.77 -52.49 -0.36 2.05 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 8 Si 0.88 21.88 24.37 -169.99 -4.14 17.74 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 12 N -0.51 -9.98 4.88 -229.60 -1.12 -11.10 16 13 C 0.05 0.75 5.44 -3.74 -0.02 0.73 16 14 C -0.12 -1.78 5.11 -27.93 -0.14 -1.92 16 15 C -0.09 -1.41 5.06 -104.58 -0.53 -1.94 16 16 C -0.09 -1.38 9.65 -39.50 -0.38 -1.76 16 17 C -0.16 -2.40 10.03 -39.58 -0.40 -2.80 16 18 C 0.09 1.45 7.30 -39.49 -0.29 1.16 16 19 F -0.15 -2.36 17.27 2.25 0.04 -2.32 16 20 C -0.15 -2.45 9.63 -39.41 -0.38 -2.83 16 21 C -0.06 -1.02 5.31 -104.63 -0.56 -1.58 16 22 C 0.09 1.66 5.34 -5.16 -0.03 1.63 16 23 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 24 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.08 1.17 6.76 -51.93 -0.35 0.82 16 29 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.08 1.36 6.36 -51.93 -0.33 1.03 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.11 2.31 5.96 -51.93 -0.31 2.00 16 35 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -29.62 271.74 -7.43 -37.05 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.21 Total: 1.12 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.86 Total: -20.30 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.35 Total: -37.39 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.62 -7.43 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135147467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.652 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds