Wall clock time and date at job start Mon Mar 30 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46897 * 109.47364 * 239.99717 * 2 1 3 13 13 C 1.47164 * 110.99585 * 60.00244 * 12 2 1 14 14 C 1.52879 * 108.52117 * 52.14899 * 13 12 2 15 15 C 1.50724 * 109.97550 * 50.35434 * 14 13 12 16 16 C 1.38698 * 118.46732 * 163.15031 * 15 14 13 17 17 C 1.37991 * 120.38327 * 179.82719 * 16 15 14 18 18 C 1.38478 * 119.80674 * 359.95431 * 17 16 15 19 19 F 1.35099 * 120.09463 * 180.11762 * 18 17 16 20 20 C 1.38237 * 119.81424 * 0.09380 * 18 17 16 21 21 C 1.37855 * 121.64941 * 343.09822 * 15 14 13 22 22 C 1.46632 * 110.99792 * 182.97338 * 12 2 1 23 23 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 24 24 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 25 25 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.62715 * 171.86065 * 13 12 2 28 28 H 1.08996 * 109.63171 * 292.23961 * 13 12 2 29 29 H 1.09009 * 109.38968 * 170.50530 * 14 13 12 30 30 H 1.09002 * 109.39050 * 290.29735 * 14 13 12 31 31 H 1.08000 * 119.80835 * 359.79970 * 16 15 14 32 32 H 1.08008 * 120.09163 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.82255 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.30470 * 49.50086 * 22 12 2 35 35 H 1.09009 * 109.29651 * 168.87558 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.5479 -0.0252 -2.4232 14 6 1.8997 1.4598 -2.3330 15 6 3.3535 1.6235 -1.9704 16 6 3.9532 2.8559 -2.1831 17 6 5.2811 3.0506 -1.8621 18 6 6.0188 2.0097 -1.3236 19 9 7.3186 2.1946 -1.0049 20 6 5.4214 0.7811 -1.1125 21 6 4.0874 0.5853 -1.4376 22 6 3.4838 -0.7738 -1.1982 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9031 -0.5278 4.4376 27 1 2.0372 -0.4653 -3.2921 28 1 0.4680 -0.1439 -2.5119 29 1 1.7111 1.9355 -3.2955 30 1 1.2823 1.9323 -1.5689 31 1 3.3778 3.6677 -2.6028 32 1 5.7435 4.0121 -2.0301 33 1 5.9965 -0.0306 -0.6921 34 1 3.8228 -1.1539 -0.2345 35 1 3.8073 -1.4555 -1.9849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135147467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:16 Heat of formation + Delta-G solvation = -27.584356 kcal Electronic energy + Delta-G solvation = -18680.236673 eV Core-core repulsion = 15784.870211 eV Total energy + Delta-G solvation = -2895.366462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.90745 -41.40540 -38.39442 -35.06290 -33.61683 -32.94338 -30.83388 -30.04447 -27.01674 -25.56958 -24.39247 -23.42644 -22.49732 -20.02160 -18.92489 -18.09820 -17.61112 -17.08995 -16.63608 -16.42116 -15.97399 -15.64260 -15.39342 -15.01510 -14.61026 -14.49565 -14.20340 -13.89731 -13.55220 -13.40341 -13.05445 -12.67543 -12.62654 -12.31209 -12.25650 -12.11848 -11.83665 -11.72230 -11.38822 -10.94883 -10.71262 -9.83558 -9.40071 -8.99679 -8.27006 -6.28216 0.16982 0.26169 1.27982 1.33311 1.42470 2.31508 2.57279 3.07630 3.23081 3.30349 3.73317 3.78498 3.96736 4.11130 4.28088 4.32568 4.43826 4.55875 4.64970 4.69203 4.73438 4.85698 4.93097 4.95052 4.98759 5.03628 5.09678 5.15883 5.24199 5.31621 5.53655 5.61633 5.71726 5.96637 6.03959 6.37039 6.71137 6.78614 7.35800 8.89424 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008873 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.759736 B = 3154.767828 C = 3621.169998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 H 0.002 0.998 4 C -0.503 4.503 5 H 0.042 0.958 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.264 1.264 10 H -0.304 1.304 11 H -0.250 1.250 12 N -0.526 5.526 13 C 0.045 3.955 14 C -0.114 4.114 15 C -0.098 4.098 16 C -0.089 4.089 17 C -0.158 4.158 18 C 0.074 3.926 19 F -0.150 7.150 20 C -0.163 4.163 21 C -0.080 4.080 22 C 0.095 3.905 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 8.404 -15.084 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.076 3.924 3 H 0.019 0.981 4 C -0.541 4.541 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.771 3.229 9 H -0.190 1.190 10 H -0.233 1.233 11 H -0.174 1.174 12 N -0.247 5.247 13 C -0.083 4.083 14 C -0.152 4.152 15 C -0.098 4.098 16 C -0.107 4.107 17 C -0.176 4.176 18 C 0.055 3.945 19 F -0.128 7.128 20 C -0.183 4.183 21 C -0.082 4.082 22 C -0.034 4.034 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.621 7.890 -14.887 16.860 hybrid contribution 0.560 1.022 1.150 1.637 sum 1.181 8.911 -13.737 16.417 Atomic orbital electron populations 1.22110 0.96909 1.01492 0.99657 1.19525 0.92479 0.92322 0.88080 0.98095 1.21287 1.30458 1.12151 0.90202 0.93985 1.25726 0.97518 0.99740 0.95540 1.70036 1.48048 1.42501 0.98464 0.85942 0.79548 0.80412 0.77009 1.18969 1.23269 1.17407 1.62509 1.07840 1.51782 1.02558 1.22399 1.02010 0.91155 0.92692 1.21149 0.90939 0.99858 1.03268 1.19956 0.97055 0.93522 0.99278 1.21279 0.93892 0.96908 0.98601 1.21316 0.95253 0.99100 1.01937 1.17825 0.78748 0.95637 1.02338 1.91448 1.34418 1.95909 1.91058 1.21174 0.96118 0.97160 1.03831 1.20436 0.93085 0.98303 0.96384 1.21068 0.88051 0.91940 1.02306 0.95121 0.91194 0.92662 0.92779 0.89483 0.88873 0.87057 0.91141 0.81986 0.82393 0.85233 0.91139 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 8.31 71.98 0.60 -5.16 16 2 C 0.18 8.18 0.93 44.17 0.04 8.22 16 3 H 0.00 0.07 4.59 -2.39 -0.01 0.06 16 4 C -0.50 -28.13 8.37 25.60 0.21 -27.91 16 5 H 0.04 2.63 6.77 -2.91 -0.02 2.61 16 6 C 0.01 0.67 5.45 84.65 0.46 1.13 16 7 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 8 Si 0.94 44.97 24.37 68.60 1.67 46.64 16 9 H -0.26 -11.87 6.87 99.48 0.68 -11.18 16 10 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 12 N -0.53 -19.99 4.88 -880.31 -4.29 -24.29 16 13 C 0.05 1.26 5.44 86.21 0.47 1.73 16 14 C -0.11 -2.95 5.11 29.82 0.15 -2.80 16 15 C -0.10 -2.93 5.06 -19.84 -0.10 -3.03 16 16 C -0.09 -2.23 9.65 22.32 0.22 -2.01 16 17 C -0.16 -4.10 10.03 22.27 0.22 -3.88 16 18 C 0.07 2.31 7.30 22.33 0.16 2.48 16 19 F -0.15 -4.74 17.27 44.97 0.78 -3.96 16 20 C -0.16 -5.59 9.63 22.38 0.22 -5.37 16 21 C -0.08 -2.78 5.31 -19.87 -0.11 -2.88 16 22 C 0.09 3.54 5.34 85.59 0.46 3.99 16 23 H 0.03 1.28 3.27 -2.39 -0.01 1.27 16 24 H 0.07 2.21 6.17 -2.39 -0.01 2.20 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.09 2.10 8.05 -2.38 -0.02 2.09 16 28 H 0.09 2.34 6.76 -2.39 -0.02 2.32 16 29 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 2.03 6.36 -2.39 -0.02 2.01 16 31 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 34 H 0.07 3.16 5.96 -2.39 -0.01 3.15 16 35 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -66.41 271.74 2.48 -63.93 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.02 Total: 12.50 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.00 Total: -35.49 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.99 Total: -83.61 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Total: -66.41 2.48 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135147467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.347 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds