Wall clock time and date at job start Mon Mar 30 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48505 * 109.47224 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.46929 * 30.00077 * 3 2 1 6 6 H 1.48500 * 109.47090 * 150.00385 * 3 2 1 7 7 C 1.37883 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99715 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99750 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.36723 * 125.61436 * 269.96829 * 11 10 9 13 13 C 1.33961 * 107.87787 * 179.97438 * 12 11 10 14 14 C 1.40505 * 107.78417 * 0.10214 * 13 12 11 15 15 C 1.34123 * 107.74312 * 359.89625 * 14 13 12 16 16 C 1.51948 * 124.43613 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.98512 * 176.25344 * 16 14 13 18 18 O 1.42899 * 110.05807 * 54.95195 * 16 14 13 19 19 C 1.53690 * 106.81940 * 295.58401 * 16 14 13 20 20 C 1.50656 * 111.14558 * 79.79794 * 19 16 14 21 21 C 1.50657 * 117.22306 * 285.46523 * 20 19 16 22 22 C 1.51955 * 127.93717 * 179.97438 * 13 12 11 23 23 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47491 * 59.99169 * 9 7 2 25 25 H 1.09002 * 109.46528 * 299.98837 * 9 7 2 26 26 H 1.08992 * 109.47530 * 59.99438 * 10 9 7 27 27 H 1.09004 * 109.46314 * 299.99140 * 10 9 7 28 28 H 1.08006 * 126.08473 * 0.06332 * 12 11 10 29 29 H 1.08003 * 126.08456 * 180.02562 * 15 14 13 30 30 H 0.96700 * 114.00168 * 182.57510 * 18 16 14 31 31 H 1.09003 * 109.14836 * 319.36964 * 19 16 14 32 32 H 1.09008 * 109.14534 * 200.22798 * 19 16 14 33 33 H 1.09001 * 107.90117 * 163.50238 * 20 19 16 34 34 H 1.09004 * 107.89455 * 47.42034 * 20 19 16 35 35 H 1.08996 * 109.14357 * 314.09392 * 21 20 19 36 36 H 1.09001 * 109.14791 * 194.94370 * 21 20 19 37 37 H 1.09002 * 109.98405 * 125.07449 * 22 13 12 38 38 H 1.09000 * 109.97864 * 3.82313 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.2826 -2.6374 -1.1117 13 6 7.5585 -2.6367 -0.7036 14 6 7.5597 -2.6380 0.7015 15 6 6.2826 -2.6372 1.1113 16 6 8.8137 -2.6383 1.5596 17 1 8.5438 -2.5725 2.6136 18 8 9.6530 -1.5387 1.2013 19 6 9.5400 -3.9647 1.2852 20 6 10.3221 -3.9001 -0.0008 21 6 9.5400 -3.9643 -1.2869 22 6 8.8134 -2.6374 -1.5605 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8904 25 1 3.8750 -0.6799 -0.8896 26 1 3.6584 -3.1504 -0.8902 27 1 3.6577 -3.1506 0.8898 28 1 5.9434 -2.6369 -2.1371 29 1 5.9437 -2.6375 2.1368 30 1 10.4885 -1.5069 1.6873 31 1 8.8055 -4.7671 1.2170 32 1 10.2227 -4.1754 2.1085 33 1 11.0353 -4.7243 -0.0010 34 1 10.8908 -2.9702 -0.0007 35 1 8.8056 -4.7668 -1.2190 36 1 10.2227 -4.1744 -2.1104 37 1 9.4528 -1.7986 -1.2855 38 1 8.5445 -2.5704 -2.6147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135413814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:03 Heat of formation + Delta-G solvation = -19.712293 kcal Electronic energy + Delta-G solvation = -18285.047764 eV Core-core repulsion = 15513.482966 eV Total energy + Delta-G solvation = -2771.564798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04872 -37.90802 -35.09222 -33.97760 -32.16826 -31.42781 -29.63570 -27.79103 -26.28581 -23.71104 -23.01924 -21.07606 -20.11739 -19.58426 -18.41598 -17.18055 -16.68055 -16.01804 -15.38812 -14.63133 -14.33354 -14.18223 -13.79690 -13.50015 -13.25611 -12.86699 -12.77715 -12.56544 -12.47591 -11.88338 -11.66133 -11.33149 -11.11723 -10.86273 -10.69810 -10.53387 -10.47827 -10.23223 -10.16614 -9.92842 -9.71618 -9.41372 -8.66303 -7.81457 -7.63277 -6.17352 -4.18471 2.75920 3.25499 3.26252 3.33262 3.39237 3.56320 4.35869 4.60436 4.82356 4.88473 5.05353 5.16625 5.38160 5.42204 5.44752 5.50010 5.54179 5.72836 5.73904 5.75921 5.90522 6.01731 6.03731 6.17060 6.24712 6.25589 6.32049 6.35156 6.49204 6.69102 6.88012 7.03692 7.13804 7.42590 7.56404 7.77278 7.81229 7.95845 8.34328 8.83643 9.43794 10.95190 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.004927 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.320719 B = 5681.145819 C = 5823.487987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.023 4.023 10 C 0.115 3.885 11 N -0.439 5.439 12 C -0.011 4.011 13 C -0.155 4.155 14 C -0.178 4.178 15 C 0.008 3.992 16 C 0.182 3.818 17 H 0.055 0.945 18 O -0.554 6.554 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.041 4.041 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.367 0.633 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.976 -7.367 1.275 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.061 4.061 10 C -0.006 4.006 11 N -0.113 5.113 12 C -0.141 4.141 13 C -0.162 4.162 14 C -0.185 4.185 15 C -0.124 4.124 16 C 0.123 3.877 17 H 0.072 0.928 18 O -0.358 6.358 19 C -0.179 4.179 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.213 0.787 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.899 -7.144 0.859 20.222 hybrid contribution 0.574 0.768 0.424 1.049 sum 19.473 -6.376 1.283 20.531 Atomic orbital electron populations 1.69897 1.06282 1.27212 1.50139 1.24953 0.94721 0.99185 0.94052 0.86784 0.80395 0.83447 0.78780 1.20095 1.21130 1.18951 1.20903 0.88569 0.94850 1.52379 0.90700 1.19909 0.97524 0.91167 0.97455 1.22077 0.73983 1.01273 1.03229 1.44661 1.07160 1.54179 1.05257 1.21370 0.89764 1.11184 0.91795 1.19161 0.93298 1.10222 0.93497 1.18833 0.91934 1.13896 0.93811 1.21299 0.89567 1.09660 0.91914 1.20168 0.87643 0.84836 0.95033 0.92757 1.86624 1.32966 1.48977 1.67262 1.21875 0.99734 0.98920 0.97398 1.20460 0.98411 1.01678 0.94169 1.21136 0.98694 0.98243 0.96352 1.20332 0.93496 0.97152 0.96913 0.92455 0.95914 0.96325 0.89975 0.89981 0.82780 0.82722 0.78680 0.91163 0.92509 0.93613 0.91862 0.92387 0.92721 0.90727 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.53 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.53 4.37 -27.88 -0.12 -0.66 16 10 C 0.11 2.22 6.03 -4.04 -0.02 2.19 16 11 N -0.44 -7.99 2.77 -117.35 -0.32 -8.32 16 12 C -0.01 -0.19 11.41 -16.87 -0.19 -0.38 16 13 C -0.16 -2.52 5.19 -104.65 -0.54 -3.07 16 14 C -0.18 -2.85 4.91 -104.60 -0.51 -3.36 16 15 C 0.01 0.13 11.41 -16.82 -0.19 -0.06 16 16 C 0.18 2.32 3.88 -26.91 -0.10 2.22 16 17 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 18 O -0.55 -6.98 10.76 -35.23 -0.38 -7.36 16 19 C -0.14 -1.51 5.48 -27.55 -0.15 -1.66 16 20 C -0.11 -1.14 4.91 -29.08 -0.14 -1.29 16 21 C -0.11 -1.23 5.61 -27.52 -0.15 -1.38 16 22 C -0.04 -0.55 5.81 -26.88 -0.16 -0.71 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 25 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.15 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.16 2.32 8.06 -52.48 -0.42 1.89 16 30 H 0.37 2.87 9.03 45.56 0.41 3.28 16 31 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.65 6.52 -51.93 -0.34 0.32 16 35 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.06 7.07 -51.93 -0.37 0.69 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -31.57 302.43 -8.04 -39.61 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.27 Total: 1.86 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -2.73 Total: -21.12 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.45 Total: -34.72 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.38 Total: -7.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.57 -8.04 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135413814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.893 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds