Wall clock time and date at job start Mon Mar 30 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48505 * 109.47224 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.46929 * 30.00077 * 3 2 1 6 6 H 1.48500 * 109.47090 * 150.00385 * 3 2 1 7 7 C 1.37883 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99715 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99750 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.36723 * 125.61436 * 269.96829 * 11 10 9 13 13 C 1.33961 * 107.87787 * 179.97438 * 12 11 10 14 14 C 1.40505 * 107.78417 * 0.10214 * 13 12 11 15 15 C 1.34123 * 107.74312 * 359.89625 * 14 13 12 16 16 C 1.51948 * 124.43613 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.98512 * 176.25344 * 16 14 13 18 18 O 1.42899 * 110.05807 * 54.95195 * 16 14 13 19 19 C 1.53690 * 106.81940 * 295.58401 * 16 14 13 20 20 C 1.50656 * 111.14558 * 79.79794 * 19 16 14 21 21 C 1.50657 * 117.22306 * 285.46523 * 20 19 16 22 22 C 1.51955 * 127.93717 * 179.97438 * 13 12 11 23 23 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47491 * 59.99169 * 9 7 2 25 25 H 1.09002 * 109.46528 * 299.98837 * 9 7 2 26 26 H 1.08992 * 109.47530 * 59.99438 * 10 9 7 27 27 H 1.09004 * 109.46314 * 299.99140 * 10 9 7 28 28 H 1.08006 * 126.08473 * 0.06332 * 12 11 10 29 29 H 1.08003 * 126.08456 * 180.02562 * 15 14 13 30 30 H 0.96700 * 114.00168 * 182.57510 * 18 16 14 31 31 H 1.09003 * 109.14836 * 319.36964 * 19 16 14 32 32 H 1.09008 * 109.14534 * 200.22798 * 19 16 14 33 33 H 1.09001 * 107.90117 * 163.50238 * 20 19 16 34 34 H 1.09004 * 107.89455 * 47.42034 * 20 19 16 35 35 H 1.08996 * 109.14357 * 314.09392 * 21 20 19 36 36 H 1.09001 * 109.14791 * 194.94370 * 21 20 19 37 37 H 1.09002 * 109.98405 * 125.07449 * 22 13 12 38 38 H 1.09000 * 109.97864 * 3.82313 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.2826 -2.6374 -1.1117 13 6 7.5585 -2.6367 -0.7036 14 6 7.5597 -2.6380 0.7015 15 6 6.2826 -2.6372 1.1113 16 6 8.8137 -2.6383 1.5596 17 1 8.5438 -2.5725 2.6136 18 8 9.6530 -1.5387 1.2013 19 6 9.5400 -3.9647 1.2852 20 6 10.3221 -3.9001 -0.0008 21 6 9.5400 -3.9643 -1.2869 22 6 8.8134 -2.6374 -1.5605 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8904 25 1 3.8750 -0.6799 -0.8896 26 1 3.6584 -3.1504 -0.8902 27 1 3.6577 -3.1506 0.8898 28 1 5.9434 -2.6369 -2.1371 29 1 5.9437 -2.6375 2.1368 30 1 10.4885 -1.5069 1.6873 31 1 8.8055 -4.7671 1.2170 32 1 10.2227 -4.1754 2.1085 33 1 11.0353 -4.7243 -0.0010 34 1 10.8908 -2.9702 -0.0007 35 1 8.8056 -4.7668 -1.2190 36 1 10.2227 -4.1744 -2.1104 37 1 9.4528 -1.7986 -1.2855 38 1 8.5445 -2.5704 -2.6147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135413814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:02 Heat of formation + Delta-G solvation = -38.867889 kcal Electronic energy + Delta-G solvation = -18285.878413 eV Core-core repulsion = 15513.482966 eV Total energy + Delta-G solvation = -2772.395447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29753 -38.90325 -36.24118 -35.62021 -33.98142 -32.44025 -31.22058 -28.94860 -27.76094 -25.20996 -24.03756 -22.76550 -21.27589 -20.70147 -19.60988 -19.18930 -17.63317 -17.39673 -16.58505 -16.25748 -15.62344 -15.39859 -15.26216 -14.77990 -14.64456 -14.44540 -14.07757 -13.77034 -13.67370 -13.30583 -13.05799 -12.85547 -12.48315 -12.22133 -12.05256 -11.87624 -11.71151 -11.59863 -11.56258 -11.38797 -11.27994 -10.86250 -10.65026 -9.09853 -8.91893 -8.38774 -6.44306 1.28995 1.31397 1.42427 1.44841 2.05791 2.19978 2.27423 2.96525 3.68715 3.96056 4.01626 4.04609 4.17784 4.22196 4.30277 4.35898 4.50623 4.53089 4.57969 4.62277 4.65866 4.82653 4.99317 5.06827 5.12923 5.19094 5.32257 5.36239 5.37123 5.39848 5.43738 5.48894 5.67338 5.74490 6.12251 6.20485 6.48336 6.57834 6.65034 7.10363 7.21491 8.77041 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.004927 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.320719 B = 5681.145819 C = 5823.487987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.047 0.953 9 C -0.014 4.014 10 C 0.128 3.872 11 N -0.451 5.451 12 C -0.035 4.035 13 C -0.160 4.160 14 C -0.182 4.182 15 C -0.014 4.014 16 C 0.182 3.818 17 H 0.065 0.935 18 O -0.571 6.571 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.104 4.104 22 C -0.040 4.040 23 H 0.269 0.731 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.168 0.832 30 H 0.389 0.611 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.739 -7.250 1.569 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.065 0.935 9 C -0.052 4.052 10 C 0.007 3.993 11 N -0.126 5.126 12 C -0.164 4.164 13 C -0.166 4.166 14 C -0.189 4.189 15 C -0.145 4.145 16 C 0.123 3.877 17 H 0.083 0.917 18 O -0.379 6.379 19 C -0.173 4.173 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.078 4.078 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.181 0.819 29 H 0.186 0.814 30 H 0.238 0.762 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.703 -7.038 1.162 22.845 hybrid contribution -0.260 0.676 0.330 0.796 sum 21.443 -6.363 1.492 22.417 Atomic orbital electron populations 1.70020 1.07950 1.28364 1.51738 1.25809 0.95482 1.02925 0.93869 0.85764 0.79162 0.79173 0.79173 1.19264 1.20337 1.18381 1.21205 0.90780 0.93821 1.51409 0.93485 1.19749 0.94768 0.93994 0.96688 1.21737 0.75272 0.98476 1.03864 1.44565 1.06392 1.55572 1.06037 1.21732 0.90352 1.12123 0.92163 1.19593 0.93849 1.08983 0.94221 1.19352 0.92981 1.12264 0.94331 1.21719 0.90104 1.10339 0.92331 1.20218 0.86756 0.85976 0.94784 0.91716 1.86556 1.34295 1.48936 1.68076 1.21821 0.99746 0.97101 0.98619 1.20478 0.98457 1.02648 0.93348 1.21122 0.98683 0.96427 0.97901 1.20390 0.92406 0.98175 0.96802 0.92153 0.96550 0.96762 0.89502 0.89330 0.81890 0.81444 0.76182 0.92478 0.89786 0.91810 0.91450 0.93630 0.90881 0.91211 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.94 44.99 27.47 68.60 1.88 46.88 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 7 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 9 C -0.01 -0.65 4.37 29.85 0.13 -0.52 16 10 C 0.13 4.94 6.03 86.38 0.52 5.46 16 11 N -0.45 -16.21 2.77 -525.18 -1.45 -17.66 16 12 C -0.03 -1.17 11.41 82.96 0.95 -0.23 16 13 C -0.16 -5.01 5.19 -19.88 -0.10 -5.11 16 14 C -0.18 -5.59 4.91 -19.85 -0.10 -5.68 16 15 C -0.01 -0.47 11.41 82.99 0.95 0.47 16 16 C 0.18 4.19 3.88 30.48 0.12 4.31 16 17 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 18 O -0.57 -12.87 10.76 -148.98 -1.60 -14.47 16 19 C -0.14 -2.48 5.48 30.07 0.16 -2.32 16 20 C -0.11 -1.98 4.91 29.07 0.14 -1.84 16 21 C -0.10 -2.15 5.61 30.08 0.17 -1.98 16 22 C -0.04 -1.01 5.81 30.50 0.18 -0.83 16 23 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 24 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 25 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 26 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 28 H 0.16 4.99 8.06 -2.91 -0.02 4.97 16 29 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.39 4.83 9.03 -74.06 -0.67 4.16 16 31 H 0.06 1.21 7.90 -2.39 -0.02 1.19 16 32 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.16 6.52 -2.39 -0.02 1.15 16 35 H 0.04 1.05 7.90 -2.39 -0.02 1.04 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.85 7.07 -2.39 -0.02 1.83 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.35 302.43 3.27 -64.08 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.31 Total: 15.39 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.83 Total: -36.59 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.15 Total: -75.30 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.60 Total: -14.47 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -67.35 3.27 -64.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135413814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.211 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds