Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.36729 * 125.61617 * 90.02850 * 11 10 9 13 13 C 1.34113 * 107.82909 * 179.97438 * 12 11 10 14 14 C 1.40352 * 107.78776 * 0.02562 * 13 12 11 15 15 C 1.34115 * 107.78850 * 359.72787 * 14 13 12 16 16 C 1.51958 * 124.38456 * 180.02562 * 14 13 12 17 17 H 1.08995 * 110.06274 * 55.01641 * 16 14 13 18 18 O 1.42900 * 109.98150 * 176.32807 * 16 14 13 19 19 C 1.53701 * 106.81267 * 295.64872 * 16 14 13 20 20 C 1.50662 * 111.14306 * 79.80374 * 19 16 14 21 21 C 1.50660 * 117.21958 * 285.45556 * 20 19 16 22 22 C 1.51947 * 127.81132 * 180.02562 * 13 12 11 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.07999 * 126.08198 * 359.97438 * 12 11 10 29 29 H 1.07991 * 126.08465 * 180.26841 * 15 14 13 30 30 H 0.96698 * 113.99919 * 177.37129 * 18 16 14 31 31 H 1.09000 * 109.14348 * 319.37521 * 19 16 14 32 32 H 1.09001 * 109.09630 * 200.19868 * 19 16 14 33 33 H 1.08993 * 107.89436 * 163.50396 * 20 19 16 34 34 H 1.09000 * 107.86615 * 47.38984 * 20 19 16 35 35 H 1.08996 * 109.15283 * 314.09720 * 21 20 19 36 36 H 1.09003 * 109.14632 * 194.94497 * 21 20 19 37 37 H 1.09008 * 109.97815 * 3.67429 * 22 13 12 38 38 H 1.08998 * 109.98854 * 124.92812 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.2826 -2.6371 1.1106 13 6 7.5597 -2.6375 0.7010 14 6 7.5597 -2.6367 -0.7026 15 6 6.2827 -2.6418 -1.1124 16 6 8.8138 -2.6373 -1.5607 17 1 9.4531 -3.4769 -1.2879 18 8 8.4599 -2.7222 -2.9426 19 6 9.5416 -1.3118 -1.2854 20 6 10.3236 -1.3782 0.0008 21 6 9.5415 -1.3138 1.2869 22 6 8.8134 -2.6386 1.5595 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8908 28 1 5.9435 -2.6371 2.1359 29 1 5.9438 -2.6468 -2.1377 30 1 9.2155 -2.6865 -3.5450 31 1 8.8079 -0.5088 -1.2166 32 1 10.2247 -1.1024 -2.1086 33 1 11.0376 -0.5547 0.0014 34 1 10.8906 -2.3091 -0.0003 35 1 8.8079 -0.5104 1.2195 36 1 10.2243 -1.1050 2.1105 37 1 8.5430 -2.7047 2.6134 38 1 9.4517 -3.4786 1.2856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135413835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -22.545677 kcal Electronic energy + Delta-G solvation = -18275.182253 eV Core-core repulsion = 15503.494590 eV Total energy + Delta-G solvation = -2771.687663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03973 -37.70508 -35.67837 -34.00235 -32.17388 -31.23736 -29.59321 -27.81023 -26.26545 -23.67147 -23.03149 -21.06622 -20.24955 -19.63320 -18.35078 -17.27221 -16.88579 -16.10914 -14.81047 -14.63926 -14.35922 -14.13258 -13.85386 -13.64818 -13.26443 -13.10871 -12.83357 -12.62934 -12.48078 -11.91087 -11.60148 -11.37275 -11.17205 -10.93568 -10.71445 -10.57689 -10.43641 -10.35297 -10.17934 -9.92983 -9.88831 -9.40266 -8.65708 -7.78047 -7.60461 -6.16562 -4.17430 2.82182 3.25251 3.30369 3.32749 3.37836 3.59331 4.35092 4.35990 4.78333 4.81366 5.03702 5.17370 5.30690 5.39086 5.43640 5.54723 5.56253 5.65327 5.72060 5.81850 5.84793 5.94808 6.04814 6.10776 6.17540 6.21599 6.29744 6.34401 6.41219 6.66754 6.85736 7.04120 7.13732 7.43973 7.57299 7.67054 7.86825 7.98688 8.35514 8.84749 9.44558 10.96083 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.005368 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.174201 B = 5214.697682 C = 5275.246895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.022 4.022 10 C 0.114 3.886 11 N -0.442 5.442 12 C -0.005 4.005 13 C -0.173 4.173 14 C -0.180 4.180 15 C 0.021 3.979 16 C 0.184 3.816 17 H 0.056 0.944 18 O -0.564 6.564 19 C -0.141 4.141 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.041 4.041 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.373 0.627 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.639 -4.442 -0.168 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.060 4.060 10 C -0.006 4.006 11 N -0.115 5.115 12 C -0.136 4.136 13 C -0.180 4.180 14 C -0.186 4.186 15 C -0.110 4.110 16 C 0.125 3.875 17 H 0.074 0.926 18 O -0.368 6.368 19 C -0.179 4.179 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.219 0.781 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.459 -4.356 0.100 19.941 hybrid contribution 0.768 1.082 -0.259 1.352 sum 20.227 -3.273 -0.159 20.491 Atomic orbital electron populations 1.69896 1.06269 1.27182 1.50193 1.24953 0.94720 0.99159 0.94098 0.86783 0.80359 0.83504 0.78744 1.20115 1.21137 1.19012 1.20908 0.88576 0.94857 1.52268 0.90677 1.19907 0.97548 0.91202 0.97379 1.22077 0.74052 1.01239 1.03260 1.44750 1.07237 1.54100 1.05421 1.21367 0.89569 1.10756 0.91873 1.19050 0.93497 1.12566 0.92897 1.18823 0.92651 1.14251 0.92881 1.21359 0.89592 1.08275 0.91806 1.20313 0.92597 0.94827 0.79737 0.92606 1.86521 1.37167 1.96779 1.16381 1.21914 0.99403 0.99422 0.97170 1.20512 0.98301 1.01524 0.94351 1.21187 0.98991 0.98514 0.96356 1.20300 0.93277 0.96619 0.97699 0.92469 0.95953 0.96352 0.89961 0.89957 0.82671 0.82389 0.78085 0.91165 0.92220 0.92893 0.92834 0.91754 0.92373 0.91779 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.53 -14.71 9.66 -34.44 -0.33 -15.05 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.53 4.37 -27.88 -0.12 -0.65 16 10 C 0.11 2.25 6.03 -4.04 -0.02 2.23 16 11 N -0.44 -8.19 2.77 -117.32 -0.32 -8.51 16 12 C 0.00 -0.08 11.41 -16.82 -0.19 -0.27 16 13 C -0.17 -2.70 5.21 -104.66 -0.55 -3.24 16 14 C -0.18 -2.92 5.17 -104.66 -0.54 -3.46 16 15 C 0.02 0.39 10.90 -16.82 -0.18 0.20 16 16 C 0.18 2.41 3.58 -26.90 -0.10 2.32 16 17 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 18 O -0.56 -7.24 12.89 -35.23 -0.45 -7.69 16 19 C -0.14 -1.63 5.28 -27.54 -0.15 -1.77 16 20 C -0.11 -1.12 5.03 -29.07 -0.15 -1.27 16 21 C -0.11 -1.27 5.60 -27.59 -0.15 -1.42 16 22 C -0.04 -0.50 6.04 -26.95 -0.16 -0.66 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 25 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.16 2.79 7.98 -52.49 -0.42 2.37 16 30 H 0.37 2.90 9.05 45.56 0.41 3.31 16 31 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.50 7.57 -51.93 -0.39 0.10 16 35 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -31.52 305.62 -8.16 -39.67 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.34 Total: 2.30 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.74 Total: -21.05 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.45 Total: -35.02 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.45 Total: -7.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.52 -8.16 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135413835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.128 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds