Wall clock time and date at job start Mon Mar 30 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.36729 * 125.61617 * 90.02850 * 11 10 9 13 13 C 1.34113 * 107.82909 * 179.97438 * 12 11 10 14 14 C 1.40352 * 107.78776 * 0.02562 * 13 12 11 15 15 C 1.34115 * 107.78850 * 359.72787 * 14 13 12 16 16 C 1.51958 * 124.38456 * 180.02562 * 14 13 12 17 17 H 1.08995 * 110.06274 * 55.01641 * 16 14 13 18 18 O 1.42900 * 109.98150 * 176.32807 * 16 14 13 19 19 C 1.53701 * 106.81267 * 295.64872 * 16 14 13 20 20 C 1.50662 * 111.14306 * 79.80374 * 19 16 14 21 21 C 1.50660 * 117.21958 * 285.45556 * 20 19 16 22 22 C 1.51947 * 127.81132 * 180.02562 * 13 12 11 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.07999 * 126.08198 * 359.97438 * 12 11 10 29 29 H 1.07991 * 126.08465 * 180.26841 * 15 14 13 30 30 H 0.96698 * 113.99919 * 177.37129 * 18 16 14 31 31 H 1.09000 * 109.14348 * 319.37521 * 19 16 14 32 32 H 1.09001 * 109.09630 * 200.19868 * 19 16 14 33 33 H 1.08993 * 107.89436 * 163.50396 * 20 19 16 34 34 H 1.09000 * 107.86615 * 47.38984 * 20 19 16 35 35 H 1.08996 * 109.15283 * 314.09720 * 21 20 19 36 36 H 1.09003 * 109.14632 * 194.94497 * 21 20 19 37 37 H 1.09008 * 109.97815 * 3.67429 * 22 13 12 38 38 H 1.08998 * 109.98854 * 124.92812 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.2826 -2.6371 1.1106 13 6 7.5597 -2.6375 0.7010 14 6 7.5597 -2.6367 -0.7026 15 6 6.2827 -2.6418 -1.1124 16 6 8.8138 -2.6373 -1.5607 17 1 9.4531 -3.4769 -1.2879 18 8 8.4599 -2.7222 -2.9426 19 6 9.5416 -1.3118 -1.2854 20 6 10.3236 -1.3782 0.0008 21 6 9.5415 -1.3138 1.2869 22 6 8.8134 -2.6386 1.5595 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8908 28 1 5.9435 -2.6371 2.1359 29 1 5.9438 -2.6468 -2.1377 30 1 9.2155 -2.6865 -3.5450 31 1 8.8079 -0.5088 -1.2166 32 1 10.2247 -1.1024 -2.1086 33 1 11.0376 -0.5547 0.0014 34 1 10.8906 -2.3091 -0.0003 35 1 8.8079 -0.5104 1.2195 36 1 10.2243 -1.1050 2.1105 37 1 8.5430 -2.7047 2.6134 38 1 9.4517 -3.4786 1.2856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135413835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:06 Heat of formation + Delta-G solvation = -42.138296 kcal Electronic energy + Delta-G solvation = -18276.031853 eV Core-core repulsion = 15503.494590 eV Total energy + Delta-G solvation = -2772.537263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30713 -38.72972 -36.67946 -35.79212 -34.00192 -32.27289 -31.18027 -28.99127 -27.75802 -25.16620 -24.06571 -22.75208 -21.29827 -20.87519 -19.55097 -19.21886 -17.96144 -17.50330 -16.55908 -15.82970 -15.55836 -15.46527 -15.23461 -14.76632 -14.65052 -14.46704 -14.17799 -14.12170 -13.76414 -13.35171 -13.03160 -12.87564 -12.49282 -12.17963 -12.06684 -11.93957 -11.80316 -11.62336 -11.56633 -11.45522 -11.31843 -10.88532 -10.87135 -9.06858 -8.90329 -8.39528 -6.45208 1.28106 1.29709 1.41134 1.47044 2.08950 2.19580 2.26507 2.95497 3.46841 3.89087 3.95642 3.97229 4.19412 4.24120 4.33993 4.35110 4.44995 4.51429 4.55787 4.60327 4.61626 4.76087 4.97255 5.05130 5.11647 5.16779 5.27699 5.31080 5.34721 5.38083 5.40148 5.47350 5.61507 5.69695 6.11515 6.21684 6.44943 6.57167 6.64131 7.05459 7.20403 8.76377 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.005368 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.174201 B = 5214.697682 C = 5275.246895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.046 0.954 9 C -0.013 4.013 10 C 0.126 3.874 11 N -0.454 5.454 12 C -0.026 4.026 13 C -0.170 4.170 14 C -0.180 4.180 15 C -0.012 4.012 16 C 0.185 3.815 17 H 0.074 0.926 18 O -0.584 6.584 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.039 4.039 23 H 0.270 0.730 24 H 0.019 0.981 25 H 0.011 0.989 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.395 0.605 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.904 -4.091 0.202 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.573 4.573 8 H 0.064 0.936 9 C -0.051 4.051 10 C 0.005 3.995 11 N -0.128 5.128 12 C -0.156 4.156 13 C -0.177 4.177 14 C -0.187 4.187 15 C -0.142 4.142 16 C 0.126 3.874 17 H 0.092 0.908 18 O -0.392 6.392 19 C -0.173 4.173 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.077 4.077 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.187 0.813 29 H 0.170 0.830 30 H 0.245 0.755 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.763 -4.015 0.457 23.119 hybrid contribution -0.237 0.895 -0.403 1.010 sum 22.526 -3.120 0.055 22.741 Atomic orbital electron populations 1.70020 1.07954 1.28385 1.51689 1.25823 0.95512 1.02968 0.93840 0.85756 0.79243 0.79115 0.79119 1.19425 1.20175 1.18202 1.21202 0.90763 0.93837 1.51475 0.93566 1.19737 0.94809 0.93892 0.96628 1.21734 0.75480 0.98560 1.03716 1.44638 1.06407 1.55594 1.06198 1.21832 0.90185 1.11377 0.92179 1.19524 0.94347 1.10653 0.93162 1.19369 0.93225 1.12122 0.93954 1.21528 0.90598 1.10412 0.91656 1.20395 0.91160 0.96336 0.79550 0.90835 1.86474 1.39113 1.96861 1.16751 1.21868 0.99085 0.97298 0.99081 1.20527 0.98220 1.03162 0.92989 1.21185 0.98828 0.96951 0.97932 1.20429 0.91840 0.97774 0.97689 0.92129 0.96306 0.97019 0.89194 0.89931 0.81307 0.83047 0.75540 0.94224 0.89686 0.91365 0.91005 0.94308 0.90071 0.90669 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 2 C 0.02 1.00 5.47 84.66 0.46 1.46 16 3 Si 0.94 45.20 27.47 68.60 1.88 47.09 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 7 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 8 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 9 C -0.01 -0.60 4.37 29.85 0.13 -0.47 16 10 C 0.13 5.06 6.03 86.38 0.52 5.58 16 11 N -0.45 -16.85 2.77 -525.07 -1.45 -18.30 16 12 C -0.03 -0.87 11.41 82.99 0.95 0.08 16 13 C -0.17 -5.03 5.21 -19.89 -0.10 -5.13 16 14 C -0.18 -5.65 5.17 -19.89 -0.10 -5.75 16 15 C -0.01 -0.42 10.90 82.99 0.90 0.48 16 16 C 0.18 4.40 3.58 30.49 0.11 4.51 16 17 H 0.07 1.51 7.85 -2.39 -0.02 1.49 16 18 O -0.58 -13.95 12.89 -148.98 -1.92 -15.87 16 19 C -0.14 -2.76 5.28 30.07 0.16 -2.60 16 20 C -0.11 -1.88 5.03 29.08 0.15 -1.73 16 21 C -0.11 -2.16 5.60 30.04 0.17 -1.99 16 22 C -0.04 -0.84 6.04 30.45 0.18 -0.65 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 25 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 26 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.17 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.15 5.50 7.98 -2.92 -0.02 5.48 16 30 H 0.39 5.14 9.05 -74.06 -0.67 4.47 16 31 H 0.04 1.05 7.90 -2.39 -0.02 1.03 16 32 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.99 7.57 -2.39 -0.02 0.97 16 35 H 0.04 0.95 7.90 -2.39 -0.02 0.93 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.08 1.45 7.85 -2.39 -0.02 1.43 16 Total: -1.00 -68.48 305.62 2.89 -65.58 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.31 Total: 16.01 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.77 Total: -36.49 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.15 Total: -76.33 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.92 Total: -15.87 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -68.48 2.89 -65.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135413835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.446 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds