Wall clock time and date at job start Mon Mar 30 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46798 * 179.97438 * 11 10 9 13 13 C 1.36654 * 125.60063 * 269.69401 * 12 11 10 14 14 C 1.33972 * 108.05567 * 179.90504 * 13 12 11 15 15 C 1.41459 * 107.54312 * 0.27832 * 14 13 12 16 16 C 1.33971 * 107.54879 * 359.90031 * 15 14 13 17 17 C 1.50799 * 123.50406 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.72895 * 256.84702 * 17 15 14 19 19 O 1.42895 * 109.73562 * 136.20994 * 17 15 14 20 20 C 1.53413 * 108.12252 * 16.50022 * 17 15 14 21 21 C 1.53014 * 109.82380 * 309.36430 * 20 17 15 22 22 C 1.50798 * 128.95090 * 179.81849 * 14 13 12 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 25 25 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 26 26 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 27 27 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 28 28 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 29 29 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 30 30 H 1.08004 * 125.97491 * 0.08596 * 13 12 11 31 31 H 1.07997 * 125.97728 * 179.87798 * 16 15 14 32 32 H 0.96695 * 114.00175 * 180.02562 * 19 17 15 33 33 H 1.09008 * 109.41135 * 69.47021 * 20 17 15 34 34 H 1.08997 * 109.41862 * 189.25402 * 20 17 15 35 35 H 1.09001 * 109.41231 * 192.05115 * 21 20 17 36 36 H 1.08997 * 109.41120 * 311.91283 * 21 20 17 37 37 H 1.08996 * 109.73179 * 77.38051 * 22 14 13 38 38 H 1.08998 * 109.72890 * 316.69111 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1006 -0.0005 13 6 2.9441 -6.7091 -1.1119 14 6 3.7777 -7.6772 -0.7086 15 6 3.7805 -7.6756 0.7059 16 6 2.9502 -6.7051 1.1104 17 6 4.6016 -8.6284 1.5378 18 1 3.9605 -9.4140 1.9378 19 8 5.2227 -7.9192 2.6117 20 6 5.6761 -9.2467 0.6341 21 6 5.0295 -9.7974 -0.6387 22 6 4.5887 -8.6377 -1.5415 23 1 -0.4850 -0.8401 0.0004 24 1 0.6247 -2.5570 0.8897 25 1 0.6242 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8904 27 1 2.8720 -3.6042 0.8895 28 1 0.8540 -5.0445 0.8903 29 1 0.8535 -5.0451 -0.8896 30 1 2.7183 -6.4525 -2.1365 31 1 2.7287 -6.4459 2.1351 32 1 5.7672 -8.4742 3.1867 33 1 6.4082 -8.4843 0.3679 34 1 6.1751 -10.0565 1.1664 35 1 5.7500 -10.4178 -1.1718 36 1 4.1603 -10.3988 -0.3725 37 1 5.4654 -8.1284 -1.9416 38 1 3.9791 -9.0203 -2.3601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135447938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:55 Heat of formation + Delta-G solvation = -32.920953 kcal Electronic energy + Delta-G solvation = -17747.583422 eV Core-core repulsion = 14975.445854 eV Total energy + Delta-G solvation = -2772.137569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26543 -37.72726 -35.46373 -34.52357 -32.53873 -30.35984 -29.91899 -27.13255 -26.40615 -23.87959 -22.23503 -21.67005 -20.74059 -19.83580 -18.38357 -17.23730 -17.03384 -16.25799 -14.77104 -14.67905 -14.48293 -14.24475 -13.89782 -13.74274 -13.54113 -13.03016 -12.87084 -12.42707 -12.13725 -11.93229 -11.67368 -11.56747 -11.19276 -11.00163 -10.87429 -10.77378 -10.48817 -10.15716 -10.01458 -9.98725 -9.91411 -8.65929 -8.37022 -8.02235 -7.84574 -6.41076 -4.10690 2.56300 3.02883 3.28132 3.42635 3.46153 3.60288 4.38607 4.51514 4.72422 4.76307 4.96114 5.16388 5.27797 5.31024 5.36655 5.40642 5.45650 5.56321 5.57946 5.68436 5.77735 5.81297 5.85174 5.96074 5.97337 6.26070 6.28702 6.43482 6.50000 6.69875 6.77539 7.21904 7.27952 7.38192 7.49440 7.67356 7.71653 8.15184 8.42187 8.83650 9.61430 10.99704 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036274 B = 0.003920 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.713031 B = 7141.268572 C = 7332.492401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.074 2.926 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.010 3.990 10 C -0.116 4.116 11 C 0.102 3.898 12 N -0.444 5.444 13 C -0.004 4.004 14 C -0.170 4.170 15 C -0.180 4.180 16 C 0.026 3.974 17 C 0.182 3.818 18 H 0.055 0.945 19 O -0.563 6.563 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.044 4.044 23 H 0.268 0.732 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.371 0.629 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.312 -20.149 0.313 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.641 4.641 8 H 0.068 0.932 9 C -0.027 4.027 10 C -0.154 4.154 11 C -0.019 4.019 12 N -0.118 5.118 13 C -0.133 4.133 14 C -0.176 4.176 15 C -0.187 4.187 16 C -0.105 4.105 17 C 0.123 3.877 18 H 0.072 0.928 19 O -0.367 6.367 20 C -0.183 4.183 21 C -0.147 4.147 22 C -0.082 4.082 23 H 0.079 0.921 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.542 -17.703 0.025 19.243 hybrid contribution 0.443 -2.035 0.252 2.098 sum 7.985 -19.738 0.276 21.294 Atomic orbital electron populations 1.70739 1.06886 1.30587 1.46774 1.25878 0.96534 1.02817 0.93639 0.83467 0.74494 0.74728 0.77023 1.21487 1.21253 1.21273 1.22070 0.94423 0.91814 1.55745 0.93173 1.19192 0.94450 0.92951 0.96138 1.21903 0.99388 0.92341 1.01789 1.22191 0.90774 0.85367 1.03562 1.44486 1.35180 1.26634 1.05513 1.21252 1.02182 0.98141 0.91767 1.19184 1.03914 1.01304 0.93224 1.18860 1.04058 1.02578 0.93176 1.21282 1.00364 0.97176 0.91707 1.19975 0.91286 0.91135 0.85279 0.92757 1.86638 1.68041 1.39623 1.42434 1.22236 0.98786 1.00277 0.97007 1.21445 1.00176 0.97505 0.95577 1.19986 0.98005 0.93949 0.96212 0.92112 0.97262 0.97274 0.92493 0.92430 0.89798 0.89792 0.82519 0.82468 0.78244 0.91020 0.92208 0.91973 0.91935 0.91661 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.37 9.11 -34.44 -0.31 -17.68 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.12 -2.42 5.48 -26.73 -0.15 -2.57 16 11 C 0.10 1.72 6.09 -4.04 -0.02 1.69 16 12 N -0.44 -7.30 2.76 -117.43 -0.32 -7.63 16 13 C 0.00 -0.06 11.41 -16.90 -0.19 -0.25 16 14 C -0.17 -2.47 5.92 -104.85 -0.62 -3.09 16 15 C -0.18 -2.74 5.63 -104.85 -0.59 -3.33 16 16 C 0.03 0.42 11.29 -16.90 -0.19 0.23 16 17 C 0.18 2.23 3.83 -27.62 -0.11 2.12 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 O -0.56 -7.05 13.24 -35.23 -0.47 -7.52 16 20 C -0.15 -1.48 5.51 -26.51 -0.15 -1.62 16 21 C -0.11 -1.05 5.86 -26.50 -0.16 -1.21 16 22 C -0.04 -0.49 6.30 -27.61 -0.17 -0.67 16 23 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 24 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 25 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.16 2.09 8.06 -52.48 -0.42 1.66 16 31 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.37 2.74 9.10 45.56 0.41 3.15 16 33 H 0.07 0.83 8.10 -51.92 -0.42 0.41 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -32.90 312.69 -8.69 -41.59 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.41 Total: 1.43 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.88 Total: -25.90 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.43 Total: -34.90 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.47 Total: -7.52 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.90 -8.69 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135447938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.667 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds