Wall clock time and date at job start Mon Mar 30 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46798 * 179.97438 * 11 10 9 13 13 C 1.36654 * 125.60063 * 269.69401 * 12 11 10 14 14 C 1.33972 * 108.05567 * 179.90504 * 13 12 11 15 15 C 1.41459 * 107.54312 * 0.27832 * 14 13 12 16 16 C 1.33971 * 107.54879 * 359.90031 * 15 14 13 17 17 C 1.50799 * 123.50406 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.72895 * 256.84702 * 17 15 14 19 19 O 1.42895 * 109.73562 * 136.20994 * 17 15 14 20 20 C 1.53413 * 108.12252 * 16.50022 * 17 15 14 21 21 C 1.53014 * 109.82380 * 309.36430 * 20 17 15 22 22 C 1.50798 * 128.95090 * 179.81849 * 14 13 12 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 25 25 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 26 26 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 27 27 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 28 28 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 29 29 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 30 30 H 1.08004 * 125.97491 * 0.08596 * 13 12 11 31 31 H 1.07997 * 125.97728 * 179.87798 * 16 15 14 32 32 H 0.96695 * 114.00175 * 180.02562 * 19 17 15 33 33 H 1.09008 * 109.41135 * 69.47021 * 20 17 15 34 34 H 1.08997 * 109.41862 * 189.25402 * 20 17 15 35 35 H 1.09001 * 109.41231 * 192.05115 * 21 20 17 36 36 H 1.08997 * 109.41120 * 311.91283 * 21 20 17 37 37 H 1.08996 * 109.73179 * 77.38051 * 22 14 13 38 38 H 1.08998 * 109.72890 * 316.69111 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1006 -0.0005 13 6 2.9441 -6.7091 -1.1119 14 6 3.7777 -7.6772 -0.7086 15 6 3.7805 -7.6756 0.7059 16 6 2.9502 -6.7051 1.1104 17 6 4.6016 -8.6284 1.5378 18 1 3.9605 -9.4140 1.9378 19 8 5.2227 -7.9192 2.6117 20 6 5.6761 -9.2467 0.6341 21 6 5.0295 -9.7974 -0.6387 22 6 4.5887 -8.6377 -1.5415 23 1 -0.4850 -0.8401 0.0004 24 1 0.6247 -2.5570 0.8897 25 1 0.6242 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8904 27 1 2.8720 -3.6042 0.8895 28 1 0.8540 -5.0445 0.8903 29 1 0.8535 -5.0451 -0.8896 30 1 2.7183 -6.4525 -2.1365 31 1 2.7287 -6.4459 2.1351 32 1 5.7672 -8.4742 3.1867 33 1 6.4082 -8.4843 0.3679 34 1 6.1751 -10.0565 1.1664 35 1 5.7500 -10.4178 -1.1718 36 1 4.1603 -10.3988 -0.3725 37 1 5.4654 -8.1284 -1.9416 38 1 3.9791 -9.0203 -2.3601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135447938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:54 Heat of formation + Delta-G solvation = -52.897112 kcal Electronic energy + Delta-G solvation = -17748.449654 eV Core-core repulsion = 14975.445854 eV Total energy + Delta-G solvation = -2773.003800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41120 -38.70509 -36.86077 -35.95227 -34.30843 -31.45064 -31.36272 -28.21033 -27.98206 -25.56496 -23.69225 -22.57132 -22.39522 -21.02173 -19.40314 -19.05551 -18.16707 -17.62190 -16.13973 -15.97401 -15.72680 -15.62547 -15.23262 -15.06679 -14.78570 -14.55400 -13.92834 -13.76691 -13.53276 -13.34935 -13.00920 -12.86292 -12.62209 -12.58671 -12.02681 -11.92101 -11.88536 -11.82964 -11.79517 -11.33466 -10.86323 -10.76112 -10.59643 -9.22403 -9.01803 -8.74193 -6.45597 1.33905 1.49505 1.58576 1.75805 1.92072 2.03915 2.52078 3.10199 3.55327 3.69041 3.94399 3.95641 4.00976 4.12616 4.13699 4.28299 4.33719 4.43188 4.50815 4.56365 4.67746 4.72447 4.83361 4.87101 4.92450 5.06213 5.09852 5.19099 5.27196 5.35429 5.39556 5.48318 5.62117 5.92252 6.10676 6.12211 6.31758 6.46530 6.54215 7.00838 7.35047 8.66919 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036274 B = 0.003920 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.713031 B = 7141.268572 C = 7332.492401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.121 2.879 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.624 4.624 8 H 0.044 0.956 9 C 0.012 3.988 10 C -0.099 4.099 11 C 0.114 3.886 12 N -0.453 5.453 13 C -0.023 4.023 14 C -0.173 4.173 15 C -0.188 4.188 16 C -0.003 4.003 17 C 0.178 3.822 18 H 0.068 0.932 19 O -0.585 6.585 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.046 4.046 23 H 0.258 0.742 24 H -0.002 1.002 25 H 0.000 1.000 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 -21.466 0.001 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.661 4.661 8 H 0.062 0.938 9 C -0.026 4.026 10 C -0.137 4.137 11 C -0.007 4.007 12 N -0.128 5.128 13 C -0.151 4.151 14 C -0.180 4.180 15 C -0.195 4.195 16 C -0.133 4.133 17 C 0.120 3.880 18 H 0.086 0.914 19 O -0.394 6.394 20 C -0.178 4.178 21 C -0.144 4.144 22 C -0.084 4.084 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.190 0.810 31 H 0.175 0.825 32 H 0.242 0.758 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.876 -19.067 -0.278 21.033 hybrid contribution 0.057 -1.686 0.372 1.728 sum 8.934 -20.753 0.094 22.594 Atomic orbital electron populations 1.70866 1.07773 1.30059 1.48545 1.27406 0.96641 1.06738 0.92541 0.82877 0.74034 0.71019 0.77820 1.19943 1.20136 1.20033 1.22494 0.94481 0.93628 1.55539 0.93802 1.19104 0.94827 0.93630 0.94998 1.21625 0.98275 0.93189 1.00660 1.21918 0.90405 0.83670 1.04696 1.44431 1.35664 1.26683 1.06045 1.21712 1.02608 0.98592 0.92238 1.19668 1.03478 1.01345 0.93511 1.19410 1.03558 1.02365 0.94181 1.21532 1.01569 0.98340 0.91876 1.20103 0.91937 0.90539 0.85466 0.91392 1.86574 1.68668 1.41061 1.43073 1.22198 0.97790 1.00575 0.97188 1.21464 1.00875 0.96974 0.95136 1.20116 0.97760 0.93940 0.96560 0.93239 0.98417 0.98134 0.93254 0.93788 0.89004 0.88411 0.81008 0.82487 0.75763 0.92642 0.89328 0.89596 0.91625 0.91522 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.65 21.45 0.29 -57.69 16 2 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 3 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.62 -36.46 9.11 25.60 0.23 -36.23 16 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.01 0.62 4.28 29.85 0.13 0.75 16 10 C -0.10 -4.21 5.48 30.60 0.17 -4.04 16 11 C 0.11 3.86 6.09 86.38 0.53 4.39 16 12 N -0.45 -14.84 2.76 -525.44 -1.45 -16.29 16 13 C -0.02 -0.68 11.41 82.97 0.95 0.26 16 14 C -0.17 -4.85 5.92 -20.01 -0.12 -4.96 16 15 C -0.19 -5.57 5.63 -20.01 -0.11 -5.68 16 16 C 0.00 -0.10 11.29 82.97 0.94 0.84 16 17 C 0.18 4.06 3.83 30.02 0.11 4.17 16 18 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 19 O -0.59 -13.92 13.24 -148.98 -1.97 -15.89 16 20 C -0.14 -2.47 5.51 30.74 0.17 -2.30 16 21 C -0.11 -1.73 5.86 30.74 0.18 -1.55 16 22 C -0.05 -0.94 6.30 30.02 0.19 -0.75 16 23 H 0.26 16.02 7.22 -92.71 -0.67 15.35 16 24 H 0.00 -0.13 8.01 -2.38 -0.02 -0.15 16 25 H 0.00 0.02 8.01 -2.39 -0.02 0.00 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.16 4.91 8.06 -2.91 -0.02 4.89 16 32 H 0.39 5.07 9.10 -74.06 -0.67 4.40 16 33 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.65 312.69 3.20 -67.46 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.46 Total: 15.91 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.82 Total: -46.74 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.16 Total: -73.99 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.97 Total: -15.89 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -70.65 3.20 -67.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135447938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.558 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds