Wall clock time and date at job start Mon Mar 30 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.36654 * 125.59974 * 269.69111 * 12 11 10 14 14 C 1.33970 * 108.05012 * 179.80974 * 13 12 11 15 15 C 1.41455 * 107.54926 * 0.52012 * 14 13 12 16 16 C 1.33972 * 107.54399 * 359.60010 * 15 14 13 17 17 C 1.50788 * 123.50818 * 179.50479 * 15 14 13 18 18 H 1.09009 * 109.73320 * 103.15341 * 17 15 14 19 19 O 1.42901 * 109.73313 * 223.79386 * 17 15 14 20 20 C 1.53417 * 108.12284 * 343.49858 * 17 15 14 21 21 C 1.53008 * 109.82065 * 50.63868 * 20 17 15 22 22 C 1.50805 * 128.94939 * 180.44055 * 14 13 12 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 29 29 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 30 30 H 1.07997 * 125.97371 * 359.93839 * 13 12 11 31 31 H 1.07997 * 125.97652 * 180.09963 * 16 15 14 32 32 H 0.96700 * 114.00022 * 180.02562 * 19 17 15 33 33 H 1.08997 * 109.41695 * 170.74678 * 20 17 15 34 34 H 1.08998 * 109.41022 * 290.53218 * 20 17 15 35 35 H 1.08997 * 109.41614 * 48.15830 * 21 20 17 36 36 H 1.09001 * 109.41559 * 167.94918 * 21 20 17 37 37 H 1.08998 * 109.73324 * 43.92612 * 22 14 13 38 38 H 1.08998 * 109.72696 * 283.23770 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 2.9437 -6.7093 -1.1109 14 6 3.7788 -7.6761 -0.7075 15 6 3.7784 -7.6772 0.7070 16 6 2.9498 -6.7053 1.1115 17 6 4.5921 -8.6362 1.5389 18 1 5.4688 -8.1254 1.9374 19 8 3.7958 -9.1378 2.6142 20 6 5.0339 -9.7951 0.6359 21 6 5.6774 -9.2438 -0.6382 22 6 4.6001 -8.6279 -1.5404 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 0.8537 -5.0445 0.8914 29 1 0.8532 -5.0451 -0.8886 30 1 2.7162 -6.4541 -2.1353 31 1 2.7292 -6.4453 2.1362 32 1 4.2597 -9.7612 3.1897 33 1 5.7563 -10.4140 1.1680 34 1 4.1661 -10.3992 0.3713 35 1 6.4085 -8.4799 -0.3736 36 1 6.1770 -10.0529 -1.1711 37 1 5.0722 -8.0863 -2.3601 38 1 3.9597 -9.4147 -1.9389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135447960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:58 Heat of formation + Delta-G solvation = -48.183782 kcal Electronic energy + Delta-G solvation = -17694.432167 eV Core-core repulsion = 14921.632753 eV Total energy + Delta-G solvation = -2772.799415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.35485 -38.65680 -36.64323 -35.78882 -34.22626 -31.54851 -31.32034 -28.37200 -28.05385 -25.65669 -23.51172 -22.53326 -22.13404 -20.96613 -19.35533 -18.63532 -18.12926 -17.53781 -16.55950 -16.01460 -15.73992 -15.47537 -15.13286 -14.86695 -14.67022 -14.36073 -13.91128 -13.80229 -13.32748 -13.23442 -13.00821 -12.88378 -12.72431 -12.51920 -12.41115 -11.87639 -11.79597 -11.69605 -11.53861 -11.30839 -11.26869 -10.79520 -10.60330 -9.16514 -8.96267 -8.24772 -6.35928 1.37725 1.38008 1.41098 1.51465 1.96663 2.10559 2.38585 3.08777 3.57983 3.77333 3.97802 4.00672 4.13778 4.17135 4.20838 4.38535 4.41434 4.47710 4.60185 4.64934 4.73559 4.84349 4.93489 4.98162 5.06315 5.09434 5.12576 5.22713 5.43159 5.44406 5.50780 5.60039 5.68171 5.77723 6.15714 6.17958 6.37649 6.54516 6.79605 7.02901 7.33601 8.86866 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038238 B = 0.003810 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.072340 B = 7346.794536 C = 7463.154701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.104 4.104 11 C 0.113 3.887 12 N -0.452 5.452 13 C -0.022 4.022 14 C -0.175 4.175 15 C -0.189 4.189 16 C -0.002 4.002 17 C 0.178 3.822 18 H 0.062 0.938 19 O -0.583 6.583 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.045 4.045 23 H 0.265 0.735 24 H -0.001 1.001 25 H 0.002 0.998 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.393 0.607 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -19.909 -0.009 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.142 4.142 11 C -0.008 4.008 12 N -0.127 5.127 13 C -0.151 4.151 14 C -0.182 4.182 15 C -0.196 4.196 16 C -0.133 4.133 17 C 0.120 3.880 18 H 0.079 0.921 19 O -0.391 6.391 20 C -0.175 4.175 21 C -0.147 4.147 22 C -0.083 4.083 23 H 0.074 0.926 24 H 0.018 0.982 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.190 0.810 31 H 0.175 0.825 32 H 0.242 0.758 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.616 -19.130 -0.287 21.412 hybrid contribution 0.242 0.970 0.373 1.067 sum 9.858 -18.159 0.085 20.663 Atomic orbital electron populations 1.70078 1.07647 1.27852 1.51426 1.25929 0.95785 1.03231 0.94577 0.85416 0.78945 0.78845 0.77960 1.18934 1.20134 1.20211 1.21651 0.93374 0.92434 1.50924 0.92680 1.18936 0.94156 0.92299 0.95625 1.21732 0.98492 0.93177 1.00818 1.21935 0.90448 0.83886 1.04522 1.44468 1.35480 1.26765 1.05978 1.21705 1.02181 0.98904 0.92278 1.19654 1.03558 1.01461 0.93484 1.19381 1.05243 1.00841 0.94160 1.21524 1.01683 0.98150 0.91920 1.20072 0.90553 0.91918 0.85506 0.92053 1.86552 1.43829 1.65841 1.42877 1.22173 1.01039 0.97329 0.96946 1.21471 0.97270 1.00558 0.95368 1.20101 0.95700 0.96049 0.96422 0.92615 0.98233 0.98005 0.93013 0.93445 0.89281 0.88653 0.80995 0.82482 0.75791 0.89485 0.92098 0.92198 0.89555 0.90675 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.10 -4.29 5.48 30.59 0.17 -4.13 16 11 C 0.11 3.85 6.09 86.38 0.53 4.38 16 12 N -0.45 -14.84 2.76 -525.45 -1.45 -16.30 16 13 C -0.02 -0.66 11.41 82.97 0.95 0.29 16 14 C -0.17 -4.91 5.92 -20.01 -0.12 -5.02 16 15 C -0.19 -5.63 5.63 -20.02 -0.11 -5.74 16 16 C 0.00 -0.08 11.29 82.97 0.94 0.86 16 17 C 0.18 4.10 3.83 30.02 0.11 4.21 16 18 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 19 O -0.58 -13.25 13.24 -148.98 -1.97 -15.22 16 20 C -0.14 -2.39 5.51 30.74 0.17 -2.22 16 21 C -0.11 -1.84 5.86 30.74 0.18 -1.66 16 22 C -0.05 -0.92 6.30 30.02 0.19 -0.73 16 23 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.16 4.93 8.06 -2.91 -0.02 4.90 16 32 H 0.39 4.74 9.10 -74.06 -0.67 4.07 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.83 314.00 3.08 -64.74 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.35 Total: 14.65 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 3.84 Total: -38.48 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.17 Total: -71.98 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.97 Total: -15.22 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.83 3.08 -64.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135447960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.561 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds