Wall clock time and date at job start Mon Mar 30 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46716 * 2 1 4 4 C 1.50698 * 109.47702 * 119.99915 * 2 1 3 5 5 H 1.07997 * 119.99783 * 119.99974 * 4 2 1 6 6 C 1.37879 * 120.00009 * 300.00778 * 4 2 1 7 7 N 1.31516 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00093 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47198 * 89.99870 * 8 6 4 10 10 H 1.48495 * 109.47318 * 209.99479 * 8 6 4 11 11 H 1.48495 * 109.47189 * 329.99846 * 8 6 4 12 12 N 1.46900 * 109.47161 * 240.00480 * 2 1 3 13 13 C 1.47166 * 111.00273 * 59.99645 * 12 2 1 14 14 C 1.52886 * 108.51465 * 52.15093 * 13 12 2 15 15 C 1.50718 * 109.97352 * 50.34941 * 14 13 12 16 16 C 1.38645 * 118.46575 * 163.14811 * 15 14 13 17 17 C 1.38258 * 120.32873 * 179.80132 * 16 15 14 18 18 F 1.35099 * 120.11203 * 180.02562 * 17 16 15 19 19 C 1.38488 * 119.77466 * 0.02562 * 17 16 15 20 20 C 1.37970 * 119.84085 * 0.08647 * 19 17 16 21 21 C 1.37849 * 121.65974 * 343.12597 * 15 14 13 22 22 C 1.46633 * 111.00114 * 182.97506 * 12 2 1 23 23 H 1.08999 * 109.47170 * 299.99830 * 1 2 3 24 24 H 1.09002 * 109.47599 * 60.00036 * 1 2 3 25 25 H 1.08999 * 109.46716 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99809 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.63075 * 171.86282 * 13 12 2 28 28 H 1.08999 * 109.62735 * 292.24450 * 13 12 2 29 29 H 1.08999 * 109.38751 * 170.50672 * 14 13 12 30 30 H 1.09005 * 109.38672 * 290.18956 * 14 13 12 31 31 H 1.07998 * 119.83532 * 359.80816 * 16 15 14 32 32 H 1.08002 * 120.07847 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.79439 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.30436 * 49.49624 * 22 12 2 35 35 H 1.08997 * 109.30483 * 168.88213 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0078 9 1 3.6298 -0.5457 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5661 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.5478 -0.0251 -2.4233 14 6 1.8996 1.4600 -2.3330 15 6 3.3533 1.6235 -1.9703 16 6 3.9529 2.8554 -2.1828 17 6 5.2833 3.0494 -1.8602 18 9 5.8630 4.2517 -2.0686 19 6 6.0196 2.0069 -1.3226 20 6 5.4224 0.7808 -1.1137 21 6 4.0875 0.5853 -1.4381 22 6 3.4837 -0.7738 -1.1984 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1616 3.4844 27 1 2.0370 -0.4652 -3.2923 28 1 0.4679 -0.1438 -2.5120 29 1 1.7111 1.9357 -3.2954 30 1 1.2809 1.9327 -1.5702 31 1 3.3779 3.6676 -2.6024 32 1 7.0590 2.1530 -1.0683 33 1 5.9971 -0.0316 -0.6940 34 1 3.8228 -1.1540 -0.2348 35 1 3.8073 -1.4552 -1.9852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156320579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:25 Heat of formation + Delta-G solvation = -17.111731 kcal Electronic energy + Delta-G solvation = -18583.131164 eV Core-core repulsion = 15688.218829 eV Total energy + Delta-G solvation = -2894.912335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62827 -39.94013 -36.80491 -33.25293 -32.25260 -30.67943 -29.00814 -28.42224 -25.20719 -23.69669 -23.18985 -22.04699 -20.85854 -18.47057 -16.85283 -16.50426 -16.23226 -15.37010 -15.23055 -14.80002 -14.28917 -14.13255 -13.78188 -13.65595 -12.98511 -12.86510 -12.45488 -11.96634 -11.77563 -11.60204 -11.34711 -11.04213 -10.95911 -10.71714 -10.63154 -10.35588 -10.12786 -10.08751 -9.80500 -8.87463 -8.56967 -8.44567 -8.02582 -7.26474 -6.02215 -4.06248 1.50564 1.53788 3.29193 3.36327 3.39297 3.88748 4.39439 4.51452 4.94142 4.96173 5.13061 5.27179 5.31687 5.42343 5.59366 5.69353 5.78894 5.83180 6.13619 6.18892 6.31121 6.33943 6.39998 6.48023 6.53304 6.62430 6.83801 6.96502 7.06456 7.11321 7.25088 7.50703 7.68417 7.80392 8.15953 8.29814 8.55367 8.98832 9.58289 11.04671 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.008047 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.296177 B = 3478.724091 C = 4023.490002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.206 3.794 3 H 0.011 0.989 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.524 5.524 13 C 0.052 3.948 14 C -0.119 4.119 15 C -0.041 4.041 16 C -0.155 4.155 17 C 0.082 3.918 18 F -0.149 7.149 19 C -0.160 4.160 20 C -0.087 4.087 21 C -0.095 4.095 22 C 0.093 3.907 23 H 0.084 0.916 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 1.218 -9.153 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.029 0.971 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.245 5.245 13 C -0.077 4.077 14 C -0.158 4.158 15 C -0.041 4.041 16 C -0.174 4.174 17 C 0.063 3.937 18 F -0.127 7.127 19 C -0.179 4.179 20 C -0.106 4.106 21 C -0.097 4.097 22 C -0.035 4.035 23 H 0.103 0.897 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.095 0.868 -8.993 10.372 hybrid contribution 0.797 0.890 0.945 1.523 sum 5.892 1.758 -8.047 10.127 Atomic orbital electron populations 1.21844 0.97807 0.99651 0.99935 1.19347 0.92200 0.92856 0.85604 0.97100 1.21121 1.31086 1.12235 0.89876 0.91984 1.24901 0.95188 0.95054 0.98946 1.69882 1.36828 1.22976 1.23377 0.86572 0.78505 0.80096 0.82715 1.20823 1.21274 1.19817 1.62767 1.06892 1.51923 1.02931 1.22165 1.00994 0.90371 0.94160 1.21163 0.92098 1.00745 1.01777 1.19414 0.95938 0.92031 0.96711 1.20994 0.93409 0.98474 1.04550 1.17546 0.92115 0.81071 1.02941 1.91446 1.84699 1.43423 1.93170 1.20976 1.00488 0.93187 1.03262 1.20946 0.94593 0.96454 0.98562 1.20695 0.93800 0.98368 0.96878 1.21162 0.88941 0.90627 1.02795 0.89702 0.97303 0.94721 0.93013 0.92005 0.90379 0.91181 0.89265 0.85464 0.85381 0.85215 0.87935 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.60 37.16 0.32 -2.85 16 2 C 0.21 4.95 1.34 -68.87 -0.09 4.85 16 3 H 0.01 0.30 5.54 -51.93 -0.29 0.01 16 4 C -0.50 -13.37 7.79 -34.44 -0.27 -13.64 16 5 H 0.06 1.63 6.52 -52.49 -0.34 1.28 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.52 -10.70 4.88 -229.59 -1.12 -11.81 16 13 C 0.05 0.89 5.44 -3.74 -0.02 0.87 16 14 C -0.12 -2.00 5.11 -27.93 -0.14 -2.14 16 15 C -0.04 -0.72 5.06 -104.60 -0.53 -1.25 16 16 C -0.16 -2.59 9.64 -39.42 -0.38 -2.97 16 17 C 0.08 1.36 7.30 -39.48 -0.29 1.07 16 18 F -0.15 -2.40 17.27 2.25 0.04 -2.36 16 19 C -0.16 -2.48 10.03 -39.59 -0.40 -2.88 16 20 C -0.09 -1.40 9.64 -39.49 -0.38 -1.78 16 21 C -0.10 -1.71 5.32 -104.61 -0.56 -2.27 16 22 C 0.09 1.73 5.34 -5.15 -0.03 1.70 16 23 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 24 H 0.01 0.17 6.17 -51.93 -0.32 -0.15 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.08 1.30 6.76 -51.93 -0.35 0.95 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.68 6.36 -51.93 -0.33 1.35 16 31 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.10 2.05 5.96 -51.93 -0.31 1.74 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -28.22 278.57 -8.48 -36.70 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.35 Total: 1.45 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.86 Total: -19.73 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.49 Total: -36.28 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.22 -8.48 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.591 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds