Wall clock time and date at job start Mon Mar 30 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46716 * 2 1 4 4 C 1.50698 * 109.47702 * 119.99915 * 2 1 3 5 5 H 1.07997 * 119.99783 * 119.99974 * 4 2 1 6 6 C 1.37879 * 120.00009 * 300.00778 * 4 2 1 7 7 N 1.31516 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00093 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47198 * 89.99870 * 8 6 4 10 10 H 1.48495 * 109.47318 * 209.99479 * 8 6 4 11 11 H 1.48495 * 109.47189 * 329.99846 * 8 6 4 12 12 N 1.46900 * 109.47161 * 240.00480 * 2 1 3 13 13 C 1.47166 * 111.00273 * 59.99645 * 12 2 1 14 14 C 1.52886 * 108.51465 * 52.15093 * 13 12 2 15 15 C 1.50718 * 109.97352 * 50.34941 * 14 13 12 16 16 C 1.38645 * 118.46575 * 163.14811 * 15 14 13 17 17 C 1.38258 * 120.32873 * 179.80132 * 16 15 14 18 18 F 1.35099 * 120.11203 * 180.02562 * 17 16 15 19 19 C 1.38488 * 119.77466 * 0.02562 * 17 16 15 20 20 C 1.37970 * 119.84085 * 0.08647 * 19 17 16 21 21 C 1.37849 * 121.65974 * 343.12597 * 15 14 13 22 22 C 1.46633 * 111.00114 * 182.97506 * 12 2 1 23 23 H 1.08999 * 109.47170 * 299.99830 * 1 2 3 24 24 H 1.09002 * 109.47599 * 60.00036 * 1 2 3 25 25 H 1.08999 * 109.46716 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99809 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.63075 * 171.86282 * 13 12 2 28 28 H 1.08999 * 109.62735 * 292.24450 * 13 12 2 29 29 H 1.08999 * 109.38751 * 170.50672 * 14 13 12 30 30 H 1.09005 * 109.38672 * 290.18956 * 14 13 12 31 31 H 1.07998 * 119.83532 * 359.80816 * 16 15 14 32 32 H 1.08002 * 120.07847 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.79439 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.30436 * 49.49624 * 22 12 2 35 35 H 1.08997 * 109.30483 * 168.88213 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0078 9 1 3.6298 -0.5457 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5661 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.5478 -0.0251 -2.4233 14 6 1.8996 1.4600 -2.3330 15 6 3.3533 1.6235 -1.9703 16 6 3.9529 2.8554 -2.1828 17 6 5.2833 3.0494 -1.8602 18 9 5.8630 4.2517 -2.0686 19 6 6.0196 2.0069 -1.3226 20 6 5.4224 0.7808 -1.1137 21 6 4.0875 0.5853 -1.4381 22 6 3.4837 -0.7738 -1.1984 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1616 3.4844 27 1 2.0370 -0.4652 -3.2923 28 1 0.4679 -0.1438 -2.5120 29 1 1.7111 1.9357 -3.2954 30 1 1.2809 1.9327 -1.5702 31 1 3.3779 3.6676 -2.6024 32 1 7.0590 2.1530 -1.0683 33 1 5.9971 -0.0316 -0.6940 34 1 3.8228 -1.1540 -0.2348 35 1 3.8073 -1.4552 -1.9852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156320579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:24 Heat of formation + Delta-G solvation = -32.962324 kcal Electronic energy + Delta-G solvation = -18583.818497 eV Core-core repulsion = 15688.218829 eV Total energy + Delta-G solvation = -2895.599668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89692 -41.32027 -38.26937 -35.10428 -33.64432 -32.28990 -30.45947 -29.96792 -27.15638 -25.17381 -24.64335 -23.35132 -22.42611 -20.06228 -18.32981 -18.13862 -17.59010 -16.93456 -16.62014 -16.34378 -15.84679 -15.71369 -15.27216 -15.04958 -14.39332 -14.16110 -14.14406 -13.49382 -13.25911 -13.02183 -12.91710 -12.82933 -12.57469 -12.43147 -12.25960 -12.03106 -11.85856 -11.77719 -11.45531 -10.77400 -10.47575 -9.83334 -9.34921 -8.88541 -8.07361 -6.16995 0.20429 0.27694 1.42033 1.43949 1.53313 2.44369 2.60007 3.21200 3.24369 3.47459 3.70662 3.88006 3.99882 4.16411 4.27512 4.37992 4.49437 4.56385 4.75865 4.88866 4.93189 4.97686 5.01854 5.04464 5.11490 5.16687 5.25105 5.27938 5.33754 5.57185 5.67927 5.77292 5.87394 5.98598 6.32666 6.45503 6.77515 6.98492 7.51296 8.98422 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.008047 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.296177 B = 3478.724091 C = 4023.490002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.216 3.784 3 H -0.017 1.017 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.534 5.534 13 C 0.052 3.948 14 C -0.114 4.114 15 C -0.059 4.059 16 C -0.162 4.162 17 C 0.072 3.928 18 F -0.148 7.148 19 C -0.158 4.158 20 C -0.091 4.091 21 C -0.116 4.116 22 C 0.095 3.905 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.258 0.742 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 0.751 -9.990 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 H 0.000 1.000 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.256 5.256 13 C -0.077 4.077 14 C -0.152 4.152 15 C -0.059 4.059 16 C -0.181 4.181 17 C 0.053 3.947 18 F -0.127 7.127 19 C -0.176 4.176 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.033 4.033 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.100 0.900 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.177 0.391 -9.848 11.632 hybrid contribution 0.497 1.054 1.145 1.634 sum 6.674 1.446 -8.704 11.063 Atomic orbital electron populations 1.21679 0.97841 0.99086 0.99698 1.19033 0.92065 0.91285 0.86654 0.99995 1.21474 1.30654 1.12088 0.91097 0.92169 1.25634 0.95552 0.95773 1.01712 1.70019 1.38024 1.24295 1.23704 0.85651 0.77859 0.79330 0.79394 1.20508 1.21318 1.19063 1.62663 1.08260 1.51853 1.02789 1.22265 1.01404 0.90601 0.93389 1.21097 0.91263 1.00424 1.02412 1.19591 0.96403 0.92498 0.97410 1.21180 0.93800 0.98599 1.04507 1.17743 0.92339 0.81421 1.03191 1.91447 1.84637 1.43390 1.93182 1.21283 1.01714 0.92505 1.02125 1.21219 0.94168 0.97435 0.98113 1.20787 0.94840 0.98208 0.97904 1.21127 0.87824 0.91677 1.02665 0.92561 0.94908 0.95225 0.93258 0.89506 0.90053 0.88164 0.91964 0.84020 0.82721 0.83075 0.89956 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.60 71.98 0.62 -5.33 16 2 C 0.22 10.47 1.34 44.17 0.06 10.53 16 3 H -0.02 -0.94 5.54 -2.39 -0.01 -0.95 16 4 C -0.51 -27.42 7.79 25.60 0.20 -27.22 16 5 H 0.06 3.16 6.52 -2.91 -0.02 3.14 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.53 -21.33 4.88 -880.30 -4.29 -25.62 16 13 C 0.05 1.67 5.44 86.21 0.47 2.14 16 14 C -0.11 -3.66 5.11 29.82 0.15 -3.51 16 15 C -0.06 -2.01 5.06 -19.85 -0.10 -2.11 16 16 C -0.16 -5.18 9.64 22.37 0.22 -4.97 16 17 C 0.07 2.26 7.30 22.33 0.16 2.42 16 18 F -0.15 -4.53 17.27 44.97 0.78 -3.75 16 19 C -0.16 -4.54 10.03 22.27 0.22 -4.32 16 20 C -0.09 -2.76 9.64 22.33 0.22 -2.54 16 21 C -0.12 -4.01 5.32 -19.85 -0.11 -4.11 16 22 C 0.10 3.42 5.34 85.59 0.46 3.88 16 23 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 24 H 0.03 1.35 6.17 -2.39 -0.01 1.33 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.09 2.39 8.05 -2.39 -0.02 2.37 16 28 H 0.08 2.56 6.76 -2.39 -0.02 2.54 16 29 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.35 6.36 -2.38 -0.02 2.33 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.08 3.26 5.96 -2.39 -0.01 3.24 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -60.09 278.57 2.86 -57.22 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.10 Total: 13.38 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.02 Total: -34.06 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -4.05 Total: -78.12 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -60.09 2.86 -57.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.262 kcal (2) G-P(sol) polarization free energy of solvation -60.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds