Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 C 1.50700 * 109.47116 * 240.00589 * 2 1 3 5 5 H 1.08001 * 120.00321 * 239.99800 * 4 2 1 6 6 C 1.37881 * 120.00007 * 60.00068 * 4 2 1 7 7 N 1.31512 * 120.00116 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99827 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47363 * 59.99629 * 8 6 4 10 10 H 1.48501 * 109.46892 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46969 * 299.99637 * 8 6 4 12 12 N 1.46896 * 109.46957 * 120.00488 * 2 1 3 13 13 C 1.47154 * 110.99903 * 294.99739 * 12 2 1 14 14 C 1.52902 * 108.50392 * 165.35138 * 13 12 2 15 15 C 1.50715 * 109.95162 * 50.47359 * 14 13 12 16 16 C 1.38645 * 118.46325 * 163.03399 * 15 14 13 17 17 C 1.38258 * 120.33096 * 179.58902 * 16 15 14 18 18 F 1.35096 * 120.11510 * 180.02562 * 17 16 15 19 19 C 1.38491 * 119.76677 * 359.70536 * 17 16 15 20 20 C 1.37969 * 119.84500 * 0.66734 * 19 17 16 21 21 C 1.37844 * 121.66042 * 342.80958 * 15 14 13 22 22 C 1.46634 * 110.99685 * 171.98210 * 12 2 1 23 23 H 1.08999 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47226 * 299.99232 * 1 2 3 25 25 H 1.09006 * 109.47022 * 59.99764 * 1 2 3 26 26 H 0.97003 * 119.99990 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.62866 * 45.64994 * 13 12 2 28 28 H 1.08993 * 109.79525 * 285.14892 * 13 12 2 29 29 H 1.09006 * 109.38643 * 290.32933 * 14 13 12 30 30 H 1.09001 * 109.31358 * 170.57803 * 14 13 12 31 31 H 1.08001 * 119.83532 * 359.60830 * 16 15 14 32 32 H 1.07994 * 120.07646 * 180.38149 * 19 17 16 33 33 H 1.08002 * 119.79658 * 179.72808 * 20 19 17 34 34 H 1.08995 * 109.27435 * 55.70389 * 22 12 2 35 35 H 1.09004 * 109.26472 * 296.23793 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6993 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3214 -1.1200 -4.0081 9 1 1.8259 -2.5198 -4.0080 10 1 1.8260 -0.4201 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 7 2.0196 -0.6926 1.1994 13 6 1.6480 0.0403 2.4201 14 6 1.8490 -0.8843 3.6213 15 6 3.2251 -1.4970 3.5741 16 6 3.7331 -2.0705 4.7296 17 6 4.9878 -2.6511 4.7276 18 9 5.4783 -3.2092 5.8560 19 6 5.7374 -2.6644 3.5632 20 6 5.2341 -2.0865 2.4159 21 6 3.9758 -1.5017 2.4180 22 6 3.4728 -0.8797 1.1416 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7081 1.1612 -3.4844 27 1 0.6025 0.3427 2.3617 28 1 2.2790 0.9225 2.5275 29 1 1.0995 -1.6755 3.5982 30 1 1.7400 -0.3093 4.5409 31 1 3.1455 -2.0640 5.6358 32 1 6.7156 -3.1220 3.5544 33 1 5.8211 -2.0935 1.5094 34 1 3.9547 0.0874 0.9983 35 1 3.7185 -1.5311 0.3028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156320697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = -20.005006 kcal Electronic energy + Delta-G solvation = -18023.508703 eV Core-core repulsion = 15128.470906 eV Total energy + Delta-G solvation = -2895.037796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.76863 -39.71222 -36.84378 -33.61034 -32.33160 -31.04996 -29.17670 -28.23842 -25.37142 -23.85444 -23.05431 -22.17419 -20.27139 -19.03761 -17.05126 -16.50431 -16.18509 -15.56239 -15.39025 -15.02072 -14.28693 -14.20057 -13.72798 -13.57521 -12.99583 -12.97033 -12.77155 -12.18683 -11.87057 -11.78293 -11.47181 -11.01917 -11.01180 -10.72772 -10.63870 -10.35087 -10.18804 -10.11326 -9.77128 -8.88789 -8.74982 -8.48308 -8.20801 -7.25724 -6.06033 -4.11533 1.34808 1.38424 3.29051 3.34023 3.36591 3.73945 4.36151 4.37711 4.79684 4.86224 4.96350 5.14931 5.26081 5.33192 5.46190 5.64791 5.72214 5.85043 6.08913 6.15163 6.17201 6.20551 6.30013 6.42772 6.46796 6.53521 6.80590 6.87203 7.02957 7.07767 7.11668 7.47040 7.64816 7.77562 8.12480 8.26448 8.51834 8.94258 9.54153 11.00624 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.005788 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.232268 B = 4836.105723 C = 5555.200833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.510 4.510 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.045 3.955 14 C -0.075 4.075 15 C -0.040 4.040 16 C -0.158 4.158 17 C 0.082 3.918 18 F -0.148 7.148 19 C -0.159 4.159 20 C -0.091 4.091 21 C -0.072 4.072 22 C 0.100 3.900 23 H 0.035 0.965 24 H 0.009 0.991 25 H 0.085 0.915 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.042 0.958 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -3.330 11.313 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.549 4.549 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.084 4.084 14 C -0.113 4.113 15 C -0.040 4.040 16 C -0.177 4.177 17 C 0.063 3.937 18 F -0.127 7.127 19 C -0.178 4.178 20 C -0.109 4.109 21 C -0.073 4.073 22 C -0.028 4.028 23 H 0.054 0.946 24 H 0.027 0.973 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.060 0.940 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.854 -3.687 11.204 12.755 hybrid contribution 0.832 0.190 -0.646 1.070 sum 5.686 -3.497 10.559 12.492 Atomic orbital electron populations 1.21819 0.97448 0.99749 0.99872 1.19273 0.92569 0.92012 0.85566 0.98226 1.21131 1.31486 1.12413 0.89828 0.91869 1.24924 0.95077 0.95002 0.99025 1.69877 1.36610 1.22929 1.23620 0.86592 0.79086 0.79817 0.82112 1.20181 1.21322 1.20308 1.62448 1.10276 1.49592 1.02908 1.22150 1.01367 0.94098 0.90765 1.20599 0.92906 0.99268 0.98498 1.19516 0.96324 0.96648 0.91529 1.21037 0.94955 1.02015 0.99645 1.17570 0.94067 0.99377 0.82685 1.91454 1.87959 1.83408 1.49830 1.20973 1.00877 1.03774 0.92183 1.20967 0.95328 0.96899 0.97753 1.20125 0.93652 0.97787 0.95732 1.20893 0.89558 0.99119 0.93246 0.94601 0.97258 0.89611 0.92855 0.90081 0.95537 0.89736 0.91027 0.85281 0.85222 0.85018 0.94011 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.91 37.16 0.33 -2.77 16 2 C 0.21 5.15 2.05 -68.87 -0.14 5.01 16 3 H 0.00 0.00 8.13 -51.93 -0.42 -0.42 16 4 C -0.51 -13.45 7.96 -34.44 -0.27 -13.72 16 5 H 0.06 1.65 6.12 -52.49 -0.32 1.32 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.53 -10.98 4.54 -229.59 -1.04 -12.02 16 13 C 0.04 0.79 5.44 -3.74 -0.02 0.77 16 14 C -0.08 -1.10 5.94 -27.93 -0.17 -1.27 16 15 C -0.04 -0.62 5.77 -104.61 -0.60 -1.22 16 16 C -0.16 -2.21 9.64 -39.42 -0.38 -2.59 16 17 C 0.08 1.16 7.30 -39.48 -0.29 0.87 16 18 F -0.15 -2.07 17.27 2.25 0.04 -2.03 16 19 C -0.16 -2.13 10.03 -39.59 -0.40 -2.53 16 20 C -0.09 -1.30 9.64 -39.49 -0.38 -1.68 16 21 C -0.07 -1.19 5.79 -104.61 -0.61 -1.80 16 22 C 0.10 1.91 4.74 -5.15 -0.02 1.88 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.18 6.27 -51.93 -0.33 -0.14 16 25 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 27 H 0.08 1.41 5.93 -51.93 -0.31 1.10 16 28 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.10 2.00 6.15 -51.93 -0.32 1.68 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -27.59 284.27 -8.68 -36.27 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.52 Total: -0.63 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.05 Total: -17.49 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.41 Total: -36.14 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.59 -8.68 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.263 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds