Wall clock time and date at job start Mon Mar 30 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 C 1.50700 * 109.47116 * 240.00589 * 2 1 3 5 5 H 1.08001 * 120.00321 * 239.99800 * 4 2 1 6 6 C 1.37881 * 120.00007 * 60.00068 * 4 2 1 7 7 N 1.31512 * 120.00116 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99827 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47363 * 59.99629 * 8 6 4 10 10 H 1.48501 * 109.46892 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46969 * 299.99637 * 8 6 4 12 12 N 1.46896 * 109.46957 * 120.00488 * 2 1 3 13 13 C 1.47154 * 110.99903 * 294.99739 * 12 2 1 14 14 C 1.52902 * 108.50392 * 165.35138 * 13 12 2 15 15 C 1.50715 * 109.95162 * 50.47359 * 14 13 12 16 16 C 1.38645 * 118.46325 * 163.03399 * 15 14 13 17 17 C 1.38258 * 120.33096 * 179.58902 * 16 15 14 18 18 F 1.35096 * 120.11510 * 180.02562 * 17 16 15 19 19 C 1.38491 * 119.76677 * 359.70536 * 17 16 15 20 20 C 1.37969 * 119.84500 * 0.66734 * 19 17 16 21 21 C 1.37844 * 121.66042 * 342.80958 * 15 14 13 22 22 C 1.46634 * 110.99685 * 171.98210 * 12 2 1 23 23 H 1.08999 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47226 * 299.99232 * 1 2 3 25 25 H 1.09006 * 109.47022 * 59.99764 * 1 2 3 26 26 H 0.97003 * 119.99990 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.62866 * 45.64994 * 13 12 2 28 28 H 1.08993 * 109.79525 * 285.14892 * 13 12 2 29 29 H 1.09006 * 109.38643 * 290.32933 * 14 13 12 30 30 H 1.09001 * 109.31358 * 170.57803 * 14 13 12 31 31 H 1.08001 * 119.83532 * 359.60830 * 16 15 14 32 32 H 1.07994 * 120.07646 * 180.38149 * 19 17 16 33 33 H 1.08002 * 119.79658 * 179.72808 * 20 19 17 34 34 H 1.08995 * 109.27435 * 55.70389 * 22 12 2 35 35 H 1.09004 * 109.26472 * 296.23793 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6993 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3214 -1.1200 -4.0081 9 1 1.8259 -2.5198 -4.0080 10 1 1.8260 -0.4201 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 7 2.0196 -0.6926 1.1994 13 6 1.6480 0.0403 2.4201 14 6 1.8490 -0.8843 3.6213 15 6 3.2251 -1.4970 3.5741 16 6 3.7331 -2.0705 4.7296 17 6 4.9878 -2.6511 4.7276 18 9 5.4783 -3.2092 5.8560 19 6 5.7374 -2.6644 3.5632 20 6 5.2341 -2.0865 2.4159 21 6 3.9758 -1.5017 2.4180 22 6 3.4728 -0.8797 1.1416 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7081 1.1612 -3.4844 27 1 0.6025 0.3427 2.3617 28 1 2.2790 0.9225 2.5275 29 1 1.0995 -1.6755 3.5982 30 1 1.7400 -0.3093 4.5409 31 1 3.1455 -2.0640 5.6358 32 1 6.7156 -3.1220 3.5544 33 1 5.8211 -2.0935 1.5094 34 1 3.9547 0.0874 0.9983 35 1 3.7185 -1.5311 0.3028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156320697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:28 Heat of formation + Delta-G solvation = -34.862644 kcal Electronic energy + Delta-G solvation = -18024.152978 eV Core-core repulsion = 15128.470906 eV Total energy + Delta-G solvation = -2895.682072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85724 -40.97735 -38.35098 -35.31202 -33.74901 -32.59702 -30.50535 -29.80847 -27.30488 -25.30335 -24.42169 -23.37198 -21.91479 -20.48081 -18.46985 -18.03723 -17.65429 -16.82835 -16.63860 -16.52037 -15.88528 -15.53992 -15.25261 -14.94538 -14.46794 -14.24506 -14.15328 -13.62800 -13.49107 -13.22858 -12.93943 -12.80913 -12.54919 -12.31779 -12.20206 -12.05620 -11.98944 -11.76842 -11.35039 -10.80941 -10.50904 -9.83939 -9.43670 -8.93603 -8.10818 -6.22841 0.19213 0.28967 1.43812 1.45453 1.52635 2.42898 2.59863 3.16470 3.26973 3.30660 3.72171 3.82169 3.99151 4.16786 4.29012 4.38935 4.50168 4.60644 4.67188 4.81029 4.83562 4.94187 5.02277 5.04569 5.08784 5.15384 5.20822 5.25703 5.35127 5.49776 5.67643 5.73448 5.80092 5.97348 6.25148 6.38671 6.70875 6.91387 7.46682 8.95006 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.005788 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.232268 B = 4836.105723 C = 5555.200833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.035 1.035 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.534 5.534 13 C 0.042 3.958 14 C -0.068 4.068 15 C -0.050 4.050 16 C -0.154 4.154 17 C 0.079 3.921 18 F -0.146 7.146 19 C -0.154 4.154 20 C -0.092 4.092 21 C -0.096 4.096 22 C 0.107 3.893 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.026 0.974 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -4.525 12.731 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H -0.018 1.018 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.259 5.259 13 C -0.086 4.086 14 C -0.105 4.105 15 C -0.051 4.051 16 C -0.172 4.172 17 C 0.060 3.940 18 F -0.124 7.124 19 C -0.172 4.172 20 C -0.110 4.110 21 C -0.096 4.096 22 C -0.021 4.021 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.163 0.837 34 H 0.044 0.956 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.636 -4.890 12.644 14.681 hybrid contribution 0.630 0.564 -1.008 1.316 sum 6.266 -4.326 11.636 13.905 Atomic orbital electron populations 1.21632 0.96984 0.99308 0.99818 1.19070 0.92921 0.90208 0.86940 1.01778 1.21429 1.31412 1.12404 0.90945 0.92082 1.25683 0.95292 0.95682 1.01831 1.70007 1.37582 1.24132 1.24123 0.85621 0.78797 0.78678 0.78609 1.19797 1.21073 1.19557 1.62387 1.11359 1.49382 1.02748 1.22251 1.01142 0.94603 0.90576 1.20582 0.92721 0.99034 0.98134 1.19619 0.96594 0.97162 0.91677 1.21194 0.95096 1.01084 0.99837 1.17737 0.94255 0.99106 0.82912 1.91466 1.87919 1.83324 1.49729 1.21221 1.01792 1.02872 0.91356 1.21109 0.94649 0.96400 0.98852 1.19989 0.95128 0.99613 0.94885 1.20721 0.88549 0.98226 0.94625 0.95009 0.94822 0.92148 0.92927 0.90029 0.95985 0.89312 0.87791 0.82890 0.82642 0.83723 0.95641 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.91 71.98 0.64 -5.10 16 2 C 0.22 10.80 2.05 44.17 0.09 10.89 16 3 H -0.04 -1.98 8.13 -2.39 -0.02 -2.00 16 4 C -0.52 -28.23 7.96 25.60 0.20 -28.03 16 5 H 0.06 3.25 6.12 -2.91 -0.02 3.23 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.53 -22.49 4.54 -880.30 -3.99 -26.49 16 13 C 0.04 1.46 5.44 86.22 0.47 1.93 16 14 C -0.07 -1.83 5.94 29.82 0.18 -1.65 16 15 C -0.05 -1.45 5.77 -19.86 -0.11 -1.56 16 16 C -0.15 -3.82 9.64 22.37 0.22 -3.60 16 17 C 0.08 1.99 7.30 22.33 0.16 2.15 16 18 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 19 C -0.15 -3.68 10.03 22.27 0.22 -3.46 16 20 C -0.09 -2.48 9.64 22.33 0.22 -2.27 16 21 C -0.10 -3.07 5.79 -19.86 -0.12 -3.19 16 22 C 0.11 4.17 4.74 85.59 0.41 4.57 16 23 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.03 1.40 6.27 -2.39 -0.01 1.39 16 25 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 26 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.08 2.76 5.93 -2.39 -0.01 2.75 16 28 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 29 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.03 1.05 8.13 -2.39 -0.02 1.03 16 35 H 0.08 3.38 6.15 -2.38 -0.01 3.36 16 Total: -1.00 -59.46 284.27 3.16 -56.29 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.09 Total: 8.12 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.02 Total: -28.09 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.75 Total: -78.43 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -59.46 3.16 -56.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.429 kcal (2) G-P(sol) polarization free energy of solvation -59.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds