Wall clock time and date at job start Mon Mar 30 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.63974 * 2 1 4 4 C 1.55158 * 110.71780 * 236.86366 * 2 1 3 5 5 C 1.54917 * 101.57978 * 276.95878 * 4 2 1 6 6 N 1.47422 * 104.83074 * 322.98980 * 5 4 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 4 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47071 * 89.99686 * 11 9 7 13 13 H 1.48505 * 109.47192 * 209.99621 * 11 9 7 14 14 H 1.48494 * 109.47207 * 329.99972 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 4 16 16 H 1.09001 * 110.01030 * 239.44947 * 15 6 5 17 17 C 1.50709 * 109.87932 * 118.35917 * 15 6 5 18 18 C 1.38268 * 119.98611 * 142.19034 * 17 15 6 19 19 C 1.38220 * 120.04892 * 179.97438 * 18 17 15 20 20 C 1.38218 * 120.02578 * 359.97438 * 19 18 17 21 21 C 1.38439 * 119.97563 * 0.02977 * 20 19 18 22 22 F 1.35093 * 120.02471 * 179.97438 * 21 20 19 23 23 C 1.38172 * 119.98520 * 321.91562 * 17 15 6 24 24 H 1.09001 * 109.47159 * 181.68685 * 1 2 3 25 25 H 1.09007 * 109.46973 * 301.68156 * 1 2 3 26 26 H 1.09000 * 109.47427 * 61.68595 * 1 2 3 27 27 H 1.08998 * 111.00511 * 158.88409 * 4 2 1 28 28 H 1.09006 * 111.00657 * 35.03043 * 4 2 1 29 29 H 1.08998 * 110.36726 * 81.82993 * 5 4 2 30 30 H 1.09005 * 110.36534 * 204.15515 * 5 4 2 31 31 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 32 32 H 1.07997 * 119.97423 * 359.97438 * 18 17 15 33 33 H 1.08003 * 119.98651 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.01052 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.01269 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7933 -1.2152 5 6 2.0169 -2.2493 -0.6898 6 7 2.3780 -2.1516 0.7362 7 6 2.9033 -3.1614 1.4974 8 1 3.1347 -2.9888 2.5381 9 6 3.1385 -4.4069 0.9314 10 7 2.8561 -4.6174 -0.3368 11 14 3.8558 -5.7842 1.9698 12 1 2.7536 -6.5544 2.6000 13 1 4.6604 -6.6866 1.1075 14 1 4.7235 -5.2064 3.0273 15 6 2.0799 -0.7906 1.2058 16 1 2.9887 -0.3166 1.5766 17 6 1.0452 -0.8413 2.3004 18 6 1.1349 0.0220 3.3766 19 6 0.1864 -0.0230 4.3810 20 6 -0.8533 -0.9310 4.3102 21 6 -0.9441 -1.7960 3.2332 22 9 -1.9595 -2.6842 3.1632 23 6 0.0042 -1.7468 2.2252 24 1 -0.3633 -1.0272 0.0303 25 1 -0.3633 0.5398 0.8746 26 1 -0.3634 0.4874 -0.9047 27 1 3.1049 -0.5025 -1.4404 28 1 1.4377 -0.6651 -2.0874 29 1 1.0090 -2.6496 -0.7993 30 1 2.7343 -2.8751 -1.2207 31 1 3.0202 -5.4878 -0.7321 32 1 1.9467 0.7321 3.4325 33 1 0.2572 0.6522 5.2210 34 1 -1.5946 -0.9657 5.0950 35 1 -0.0683 -2.4177 1.3820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175146508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:00 Heat of formation + Delta-G solvation = 2.878117 kcal Electronic energy + Delta-G solvation = -18768.693643 eV Core-core repulsion = 15874.648133 eV Total energy + Delta-G solvation = -2894.045510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.40563 -39.41592 -37.07078 -33.09842 -31.17851 -30.18823 -30.02811 -27.59617 -25.92456 -24.02091 -22.20543 -21.85547 -19.98088 -18.92175 -17.07712 -16.53021 -15.76260 -15.66916 -15.13986 -14.90451 -14.28434 -14.02463 -13.48740 -13.39812 -12.91418 -12.54425 -12.28319 -11.91824 -11.58874 -11.50048 -11.21830 -11.18499 -10.89406 -10.84205 -10.71228 -10.11712 -10.07573 -9.81032 -9.71215 -9.48303 -8.69361 -8.31815 -8.17145 -6.89634 -5.67142 -3.09806 1.65108 1.75336 3.39998 3.45707 3.46585 4.08630 4.47795 4.72847 5.14284 5.18722 5.34582 5.42969 5.46109 5.57763 5.59096 5.64560 5.89578 5.93760 6.13153 6.19987 6.22930 6.33880 6.44414 6.50982 6.54194 6.63589 6.67198 6.69747 6.78746 6.93039 7.23417 7.42755 7.51382 7.64203 7.85004 8.33927 9.20251 9.80401 10.43791 11.36020 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.009957 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.250038 B = 2811.277186 C = 3601.984630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.143 4.143 5 C 0.151 3.849 6 N -0.589 5.589 7 C -0.220 4.220 8 H 0.076 0.924 9 C -0.007 4.007 10 N -0.920 5.920 11 Si 0.911 3.089 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.194 3.806 16 H 0.048 0.952 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.173 4.173 21 C 0.084 3.916 22 F -0.148 7.148 23 C -0.110 4.110 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.107 0.893 31 H 0.252 0.748 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 9.973 3.551 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.182 4.182 5 C 0.027 3.973 6 N -0.312 5.312 7 C -0.348 4.348 8 H 0.094 0.906 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.741 3.259 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.085 3.915 16 H 0.065 0.935 17 C -0.042 4.042 18 C -0.156 4.156 19 C -0.120 4.120 20 C -0.192 4.192 21 C 0.065 3.935 22 F -0.127 7.127 23 C -0.129 4.129 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.773 9.680 3.499 11.345 hybrid contribution 0.059 -0.994 0.715 1.226 sum -4.714 8.686 4.214 10.744 Atomic orbital electron populations 1.21916 0.95279 1.02249 1.00324 1.22061 0.95527 0.97970 0.95657 0.91419 1.23087 0.99629 0.99447 0.95998 1.21977 0.99468 0.91195 0.84679 1.44597 1.72833 1.06408 1.07372 1.19016 1.33571 0.89213 0.92973 0.90628 1.24748 1.01649 0.97560 0.96344 1.69804 1.53876 1.22304 1.10826 0.86128 0.78634 0.82086 0.79031 1.21622 1.21647 1.20681 1.20066 0.92576 0.88476 0.90349 0.93478 1.20766 0.94791 0.92499 0.96152 1.21070 0.99649 1.00299 0.94597 1.20806 0.94279 0.98247 0.98680 1.20924 1.01230 0.98509 0.98489 1.17814 0.87660 0.90953 0.97069 1.91448 1.57989 1.66751 1.96507 1.21104 0.93321 0.99822 0.98626 0.91828 0.93127 0.93539 0.92163 0.92273 0.97042 0.87532 0.93729 0.86156 0.86018 0.85891 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 7.72 37.16 0.29 -1.95 16 2 C -0.09 -1.59 3.54 -88.79 -0.31 -1.90 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.63 6.58 -24.58 -0.16 -2.80 16 5 C 0.15 3.53 5.58 -2.53 -0.01 3.52 16 6 N -0.59 -14.24 2.36 -163.87 -0.39 -14.63 16 7 C -0.22 -5.93 9.79 -15.06 -0.15 -6.07 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 11 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.19 3.84 3.27 -68.11 -0.22 3.62 16 16 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 17 C -0.04 -0.73 3.39 -104.63 -0.35 -1.09 16 18 C -0.14 -2.17 9.67 -39.58 -0.38 -2.56 16 19 C -0.10 -1.46 10.04 -39.60 -0.40 -1.86 16 20 C -0.17 -2.67 10.03 -39.51 -0.40 -3.07 16 21 C 0.08 1.54 7.30 -39.42 -0.29 1.25 16 22 F -0.15 -2.79 17.27 2.25 0.04 -2.75 16 23 C -0.11 -2.18 7.05 -39.52 -0.28 -2.46 16 24 H 0.06 1.14 5.49 -51.93 -0.29 0.85 16 25 H 0.05 0.77 7.20 -51.92 -0.37 0.40 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.01 0.29 7.78 -51.93 -0.40 -0.12 16 30 H 0.11 2.83 5.88 -51.93 -0.31 2.52 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.12 1.64 8.05 -52.49 -0.42 1.22 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.14 3.12 6.86 -52.49 -0.36 2.76 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -28.45 284.06 -7.94 -36.39 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.64 Total: 0.93 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.77 Total: -15.66 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.17 Total: -40.34 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.45 -7.94 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175146508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.270 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds