Wall clock time and date at job start Mon Mar 30 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.63974 * 2 1 4 4 C 1.55158 * 110.71780 * 236.86366 * 2 1 3 5 5 C 1.54917 * 101.57978 * 276.95878 * 4 2 1 6 6 N 1.47422 * 104.83074 * 322.98980 * 5 4 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 4 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47071 * 89.99686 * 11 9 7 13 13 H 1.48505 * 109.47192 * 209.99621 * 11 9 7 14 14 H 1.48494 * 109.47207 * 329.99972 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 4 16 16 H 1.09001 * 110.01030 * 239.44947 * 15 6 5 17 17 C 1.50709 * 109.87932 * 118.35917 * 15 6 5 18 18 C 1.38268 * 119.98611 * 142.19034 * 17 15 6 19 19 C 1.38220 * 120.04892 * 179.97438 * 18 17 15 20 20 C 1.38218 * 120.02578 * 359.97438 * 19 18 17 21 21 C 1.38439 * 119.97563 * 0.02977 * 20 19 18 22 22 F 1.35093 * 120.02471 * 179.97438 * 21 20 19 23 23 C 1.38172 * 119.98520 * 321.91562 * 17 15 6 24 24 H 1.09001 * 109.47159 * 181.68685 * 1 2 3 25 25 H 1.09007 * 109.46973 * 301.68156 * 1 2 3 26 26 H 1.09000 * 109.47427 * 61.68595 * 1 2 3 27 27 H 1.08998 * 111.00511 * 158.88409 * 4 2 1 28 28 H 1.09006 * 111.00657 * 35.03043 * 4 2 1 29 29 H 1.08998 * 110.36726 * 81.82993 * 5 4 2 30 30 H 1.09005 * 110.36534 * 204.15515 * 5 4 2 31 31 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 32 32 H 1.07997 * 119.97423 * 359.97438 * 18 17 15 33 33 H 1.08003 * 119.98651 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.01052 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.01269 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7933 -1.2152 5 6 2.0169 -2.2493 -0.6898 6 7 2.3780 -2.1516 0.7362 7 6 2.9033 -3.1614 1.4974 8 1 3.1347 -2.9888 2.5381 9 6 3.1385 -4.4069 0.9314 10 7 2.8561 -4.6174 -0.3368 11 14 3.8558 -5.7842 1.9698 12 1 2.7536 -6.5544 2.6000 13 1 4.6604 -6.6866 1.1075 14 1 4.7235 -5.2064 3.0273 15 6 2.0799 -0.7906 1.2058 16 1 2.9887 -0.3166 1.5766 17 6 1.0452 -0.8413 2.3004 18 6 1.1349 0.0220 3.3766 19 6 0.1864 -0.0230 4.3810 20 6 -0.8533 -0.9310 4.3102 21 6 -0.9441 -1.7960 3.2332 22 9 -1.9595 -2.6842 3.1632 23 6 0.0042 -1.7468 2.2252 24 1 -0.3633 -1.0272 0.0303 25 1 -0.3633 0.5398 0.8746 26 1 -0.3634 0.4874 -0.9047 27 1 3.1049 -0.5025 -1.4404 28 1 1.4377 -0.6651 -2.0874 29 1 1.0090 -2.6496 -0.7993 30 1 2.7343 -2.8751 -1.2207 31 1 3.0202 -5.4878 -0.7321 32 1 1.9467 0.7321 3.4325 33 1 0.2572 0.6522 5.2210 34 1 -1.5946 -0.9657 5.0950 35 1 -0.0683 -2.4177 1.3820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175146508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:00 Heat of formation + Delta-G solvation = -11.425834 kcal Electronic energy + Delta-G solvation = -18769.313909 eV Core-core repulsion = 15874.648133 eV Total energy + Delta-G solvation = -2894.665775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83812 -40.86728 -38.54031 -34.98323 -32.59603 -31.97797 -31.38607 -29.17615 -27.52857 -25.82057 -23.58300 -23.25256 -21.72864 -20.37661 -18.89956 -18.00421 -17.30855 -17.01477 -16.64288 -16.54131 -15.99523 -15.70066 -14.97004 -14.75723 -14.34708 -14.13884 -13.78552 -13.51847 -13.24114 -13.01941 -12.84095 -12.72041 -12.52861 -12.49753 -12.24244 -11.97216 -11.70223 -11.48748 -11.24959 -11.15798 -10.72780 -9.69358 -9.50574 -8.85327 -7.75494 -5.18587 0.32526 0.44949 1.42887 1.44470 1.52248 2.48109 2.77472 3.32662 3.39468 3.75367 3.84611 3.94462 4.04723 4.11444 4.21351 4.36532 4.52629 4.56746 4.71804 4.74395 4.81205 4.96281 5.06652 5.13762 5.21738 5.24771 5.28354 5.32863 5.45761 5.51076 5.57651 5.69742 5.82213 5.88866 6.10502 6.34099 7.13475 7.81581 8.44729 9.25695 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.009957 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.250038 B = 2811.277186 C = 3601.984630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.104 0.896 4 C -0.130 4.130 5 C 0.155 3.845 6 N -0.605 5.605 7 C -0.218 4.218 8 H 0.074 0.926 9 C -0.066 4.066 10 N -0.947 5.947 11 Si 0.967 3.033 12 H -0.295 1.295 13 H -0.293 1.293 14 H -0.268 1.268 15 C 0.185 3.815 16 H 0.053 0.947 17 C -0.054 4.054 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.163 4.163 21 C 0.060 3.940 22 F -0.159 7.159 23 C -0.130 4.130 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.079 0.921 29 H -0.020 1.020 30 H 0.070 0.930 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 12.898 5.635 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.169 4.169 5 C 0.031 3.969 6 N -0.329 5.329 7 C -0.347 4.347 8 H 0.092 0.908 9 C -0.258 4.258 10 N -0.597 5.597 11 Si 0.796 3.204 12 H -0.223 1.223 13 H -0.219 1.219 14 H -0.193 1.193 15 C 0.078 3.922 16 H 0.071 0.929 17 C -0.057 4.057 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.181 4.181 21 C 0.041 3.959 22 F -0.138 7.138 23 C -0.149 4.149 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.098 0.902 29 H -0.002 1.002 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.725 12.644 5.601 14.614 hybrid contribution -0.006 -1.837 0.127 1.842 sum -4.731 10.806 5.728 13.114 Atomic orbital electron populations 1.21829 0.94558 1.00722 1.01846 1.22099 0.96039 0.98925 0.93201 0.87823 1.22953 1.00747 0.95834 0.97351 1.21705 0.96433 0.94039 0.84762 1.44762 1.72715 1.07722 1.07669 1.19241 1.32261 0.90123 0.93072 0.90846 1.25469 1.03148 0.99745 0.97434 1.70053 1.55493 1.22071 1.12112 0.85238 0.77754 0.79543 0.77856 1.22270 1.21908 1.19330 1.20311 0.93317 0.86417 0.92110 0.92948 1.20595 0.94324 0.93710 0.97059 1.21404 1.00612 0.99603 0.93440 1.21310 0.92394 0.97584 0.99067 1.21313 1.02038 0.97149 0.97630 1.18093 0.87577 0.92091 0.98117 1.91413 1.58375 1.67381 1.96656 1.20819 0.95270 1.00476 0.98359 0.94920 0.92236 0.91272 0.91487 0.90217 1.00191 0.91195 0.94602 0.83290 0.81377 0.82934 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 7.72 71.98 0.56 -3.49 16 2 C -0.08 -2.69 3.54 -9.61 -0.03 -2.72 16 3 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.13 -4.72 6.58 31.99 0.21 -4.51 16 5 C 0.16 7.61 5.58 86.86 0.48 8.10 16 6 N -0.61 -30.09 2.36 -672.38 -1.59 -31.67 16 7 C -0.22 -12.07 9.79 84.03 0.82 -11.25 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 10 N -0.95 -56.96 10.09 21.65 0.22 -56.74 16 11 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 C 0.19 7.18 3.27 44.60 0.15 7.32 16 16 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 17 C -0.05 -1.96 3.39 -19.87 -0.07 -2.03 16 18 C -0.13 -3.66 9.67 22.27 0.22 -3.45 16 19 C -0.09 -2.03 10.04 22.26 0.22 -1.80 16 20 C -0.16 -4.49 10.03 22.31 0.22 -4.26 16 21 C 0.06 2.18 7.30 22.38 0.16 2.34 16 22 F -0.16 -6.10 17.27 44.97 0.78 -5.33 16 23 C -0.13 -5.26 7.05 22.31 0.16 -5.10 16 24 H 0.03 1.20 5.49 -2.39 -0.01 1.18 16 25 H 0.06 1.70 7.20 -2.38 -0.02 1.68 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.54 8.04 -2.38 -0.02 2.52 16 29 H -0.02 -1.07 7.78 -2.39 -0.02 -1.09 16 30 H 0.07 3.94 5.88 -2.38 -0.01 3.93 16 31 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.15 3.28 8.05 -2.91 -0.02 3.26 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.10 4.66 6.86 -2.91 -0.02 4.64 16 Total: -1.00 -65.74 284.06 6.08 -59.66 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.08 Total: 9.37 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.57 Total: -24.14 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -1.37 Total: -88.41 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.78 Total: -5.33 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -65.74 6.08 -59.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175146508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.237 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds